A B C D E F G H I L N O P R S T U V _

## A

ACL - Class in org.labkey.remoteapi.security
ACL() - Constructor for class org.labkey.remoteapi.security.ACL
addCookie(String, String, String, String, Date, boolean) - Method in class org.labkey.remoteapi.Connection
addFilter(Filter) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Adds a new filter to the list.
addFilter(String, Object, Filter.Operator) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Constructs and adds a new filter to the list.
AddGroupMembersCommand - Class in org.labkey.remoteapi.security
  Adds a set of principals to a security group.
AddGroupMembersCommand(int) - Constructor for class org.labkey.remoteapi.security.AddGroupMembersCommand
addPrincipalId(int...) - Method in class org.labkey.remoteapi.security.GroupMembersCommand
addPrincipalId(List<Integer>) - Method in class org.labkey.remoteapi.security.GroupMembersCommand
addRow(Map<String, Object>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Adds a row to the list of rows to be sent to the server.
addSort(Sort) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Adds a new sort definition to the current list.
addSort(String, Sort.Direction) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Constructs and adds a new sort definition to the current list.
afterExecute() - Method in class org.labkey.remoteapi.Connection
ApiKeyCredentialsProvider - Class in org.labkey.remoteapi
  Created by adam on 4/15/2016.
ApiKeyCredentialsProvider(String) - Constructor for class org.labkey.remoteapi.ApiKeyCredentialsProvider
ApiVersionException - Exception in org.labkey.remoteapi
  User: adam Date: Feb 23, 2009 Time: 1:13:26 PM
AssayListCommand - Class in org.labkey.remoteapi.assay
  Command for obtaining information about the current assay definitions in a particular folder.
AssayListCommand() - Constructor for class org.labkey.remoteapi.assay.AssayListCommand
  Constructs a new AssayListCommand object.
AssayListCommand(AssayListCommand) - Constructor for class org.labkey.remoteapi.assay.AssayListCommand
  Constructs a new AssayListCommand which is a copy of the source command
AssayListResponse - Class in org.labkey.remoteapi.assay
  Response class for the `AssayListCommand`.
AssayListResponse(String, int, String, JSONObject, AssayListCommand) - Constructor for class org.labkey.remoteapi.assay.AssayListResponse
  Constructs a new AssayListResponse

## B

BaseQueryCommand<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi.query
  User: brittp Date: Jun 24, 2009 Time: 10:11:39 PM
BaseQueryCommand(BaseQueryCommand<ResponseType>) - Constructor for class org.labkey.remoteapi.query.BaseQueryCommand
BaseQueryCommand(String, String) - Constructor for class org.labkey.remoteapi.query.BaseQueryCommand
BaseSelect - Interface in org.labkey.remoteapi.query
  User: adam Date: Feb 27, 2009 Time: 11:06:20 AM
BaseTransformCommand<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
BaseTransformCommand(BaseTransformCommand) - Constructor for class org.labkey.remoteapi.di.BaseTransformCommand
BaseTransformCommand(String, String) - Constructor for class org.labkey.remoteapi.di.BaseTransformCommand
BaseTransformResponse - Class in org.labkey.remoteapi.di
  User: dax Date: 11/5/13
BaseTransformResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.di.BaseTransformResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.
BasicAuthCredentialsProvider - Class in org.labkey.remoteapi
  Created by adam on 4/15/2016.
BasicAuthCredentialsProvider(String, String) - Constructor for class org.labkey.remoteapi.BasicAuthCredentialsProvider
Batch - Class in org.labkey.remoteapi.assay
  User: jeckels Date: Apr 28, 2010
Batch() - Constructor for class org.labkey.remoteapi.assay.Batch
Batch(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Batch
beforeExecute(HttpRequest) - Method in class org.labkey.remoteapi.Connection

## C

CaseInsensitiveHashMap<V> - Class in org.labkey.remoteapi.collections
  User: dave Date: Aug 26, 2009 Time: 2:57:19 PM
CaseInsensitiveHashMap() - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
CaseInsensitiveHashMap(Map<String, V>) - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
CaseInsensitiveHashMap(int) - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
CheckForStudyReloadCommand - Class in org.labkey.remoteapi.study
  Pings an existing LabKey study to check to see if it needs to be reloaded from a study archive on disk.
CheckForStudyReloadCommand() - Constructor for class org.labkey.remoteapi.study.CheckForStudyReloadCommand
CheckForStudyReloadCommand(boolean) - Constructor for class org.labkey.remoteapi.study.CheckForStudyReloadCommand
clear() - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
clearPrincipalIds() - Method in class org.labkey.remoteapi.security.GroupMembersCommand
close() - Method in class org.labkey.remoteapi.Command.Response
Command<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi
  Base class for all API commands.
Command(String, String) - Constructor for class org.labkey.remoteapi.Command
  Constructs a new Command object for calling the specified API action on the specified controller.
Command(Command<ResponseType>) - Constructor for class org.labkey.remoteapi.Command
  Constructs a new Command from an existing command
Command.CommonParameters - Enum in org.labkey.remoteapi
  An enum of common parameter names used in API URLs.
Command.Response - Class in org.labkey.remoteapi
  Response class allows clients to get an InputStream, consume lazily, and close the connection when complete.
CommandException - Exception in org.labkey.remoteapi
  Represents an exception that occurs while executing a command.
CommandException(String) - Constructor for exception org.labkey.remoteapi.CommandException
  Constructs a new CommandException given a message only.
CommandException(String, int, Map<String, Object>, String) - Constructor for exception org.labkey.remoteapi.CommandException
  Constructs a new CommandException given a message, HTTP status code, and exception property map (which may be null).
CommandResponse - Class in org.labkey.remoteapi
  Represents the details of a response returned from the LabKey Server.
CommandResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.CommandResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.
configureRequest(String, HttpUriRequest, HttpClientContext) - Method in class org.labkey.remoteapi.ApiKeyCredentialsProvider
configureRequest(String, HttpUriRequest, HttpClientContext) - Method in class org.labkey.remoteapi.BasicAuthCredentialsProvider
configureRequest(String, HttpUriRequest, HttpClientContext) - Method in interface org.labkey.remoteapi.CredentialsProvider
configureRequest(String, HttpUriRequest, HttpClientContext) - Method in class org.labkey.remoteapi.GuestCredentialsProvider
configureRequest(String, HttpUriRequest, HttpClientContext) - Method in class org.labkey.remoteapi.NetrcCredentialsProvider
Connection - Class in org.labkey.remoteapi
  Represents connection information for a particular LabKey Server.
Connection(String, CredentialsProvider) - Constructor for class org.labkey.remoteapi.Connection
  Constructs a new Connection object given a base URL and a credentials provider.
Connection(String) - Constructor for class org.labkey.remoteapi.Connection
  Constructs a new Connection object with a base URL that attempts authentication via .netrc/_netrc entry, if present.
Connection(String, String, String) - Constructor for class org.labkey.remoteapi.Connection
  Constructs a new Connection object for a base URL that attempts basic authentication.
ContainerFilter - Enum in org.labkey.remoteapi.query
  Represents a container filter that can be used with the `ExecuteSqlCommand` and the `SelectRowsCommand`.
containsKey(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
containsKey(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
CONTENT_TYPE_JSON - Static variable in class org.labkey.remoteapi.Command
  A constant for the official JSON content type ("application/json")
copy() - Method in class org.labkey.remoteapi.assay.AssayListCommand
copy() - Method in class org.labkey.remoteapi.assay.ImportRunCommand
copy() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
copy() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand
copy() - Method in class org.labkey.remoteapi.Command
  Returns a copy of this object.
copy() - Method in class org.labkey.remoteapi.PostCommand
copy() - Method in class org.labkey.remoteapi.query.DeleteRowsCommand
copy() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
copy() - Method in class org.labkey.remoteapi.query.GetQueriesCommand
copy() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
copy() - Method in class org.labkey.remoteapi.query.GetSchemasCommand
copy() - Method in class org.labkey.remoteapi.query.InsertRowsCommand
copy() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
copy() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
copy() - Method in class org.labkey.remoteapi.query.UpdateRowsCommand
copy() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
copy() - Method in class org.labkey.remoteapi.security.CreateGroupCommand
copy() - Method in class org.labkey.remoteapi.security.CreateUserCommand
copy() - Method in class org.labkey.remoteapi.security.DeleteContainerCommand
copy() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand
copy() - Method in class org.labkey.remoteapi.security.DeleteUserCommand
copy() - Method in class org.labkey.remoteapi.security.GetContainersCommand
copy() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand
copy() - Method in class org.labkey.remoteapi.security.GetUsersCommand
copy() - Method in class org.labkey.remoteapi.security.RenameGroupCommand
CreateContainerCommand - Class in org.labkey.remoteapi.security
  Create a container (project/folder/workbook) on the server User: jeckels Date: Jul 20, 2012
CreateContainerCommand(CreateContainerCommand) - Constructor for class org.labkey.remoteapi.security.CreateContainerCommand
CreateContainerCommand(String) - Constructor for class org.labkey.remoteapi.security.CreateContainerCommand
CreateContainerResponse - Class in org.labkey.remoteapi.security
  User: jeckels Date: Jul 20, 2012
CreateContainerResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.CreateContainerResponse
CreateGroupCommand - Class in org.labkey.remoteapi.security
  Creates a new user group.
CreateGroupCommand(String) - Constructor for class org.labkey.remoteapi.security.CreateGroupCommand
CreateGroupCommand(CreateGroupCommand) - Constructor for class org.labkey.remoteapi.security.CreateGroupCommand
CreateGroupResponse - Class in org.labkey.remoteapi.security
CreateGroupResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.CreateGroupResponse
createRequest(URI) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
createRequest(URI) - Method in class org.labkey.remoteapi.Command
  Creates the appropriate HttpUriRequest instance.
createRequest(URI) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
createRequest(URI) - Method in class org.labkey.remoteapi.PostCommand
  Overrides `Command.createRequest(URI)` to create an `HttpPost` object.
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.AssayListCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.Command
  Creates an instance of the response class, initialized with the response text, the HTTP status code, and parsed JSONObject.
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.di.ResetTransformStateCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.di.RunTransformCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.pipeline.FileNotificationCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetQueriesCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetSchemasCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Overridden to create a SelectRowsResponse object.
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.CreateGroupCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.CreateUserCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.DeleteContainerCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetContainersCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetUsersCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.RenameGroupCommand
createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand
CreateUserCommand - Class in org.labkey.remoteapi.security
  Create a new user account on the server.
CreateUserCommand(String) - Constructor for class org.labkey.remoteapi.security.CreateUserCommand
CreateUserCommand(CreateUserCommand) - Constructor for class org.labkey.remoteapi.security.CreateUserCommand
CreateUserResponse - Class in org.labkey.remoteapi.security
CreateUserResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.CreateUserResponse
CredentialsProvider - Interface in org.labkey.remoteapi
  Created by adam on 4/15/2016.

## D

Data - Class in org.labkey.remoteapi.assay
  Represents a data file that may be used in a run.
Data() - Constructor for class org.labkey.remoteapi.assay.Data
Data(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Data
DateParser - Class in org.labkey.remoteapi.query
  User: matthewb Date: 2012-03-12 Time: 10:55 AM not static because SimpleDatFormat is not thread-safe
DateParser() - Constructor for class org.labkey.remoteapi.query.DateParser
DeleteContainerCommand - Class in org.labkey.remoteapi.security
  Delete a container (project/folder/workbook) and all of its children.
DeleteContainerCommand() - Constructor for class org.labkey.remoteapi.security.DeleteContainerCommand
DeleteContainerCommand(DeleteContainerCommand) - Constructor for class org.labkey.remoteapi.security.DeleteContainerCommand
DeleteContainerResponse - Class in org.labkey.remoteapi.security
  Response from a DeleteContainerResponse.
DeleteContainerResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.DeleteContainerResponse
DeleteGroupCommand - Class in org.labkey.remoteapi.security
  Deletes the existing group corresponding to the group id.
DeleteGroupCommand(int) - Constructor for class org.labkey.remoteapi.security.DeleteGroupCommand
DeleteGroupCommand(DeleteGroupCommand) - Constructor for class org.labkey.remoteapi.security.DeleteGroupCommand
DeleteRowsCommand - Class in org.labkey.remoteapi.query
  Command for deleting rows from a read-write schema.
DeleteRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.DeleteRowsCommand
  Constructs a DeleteRowsCommand for the given schemaName and queryName.
DeleteRowsCommand(DeleteRowsCommand) - Constructor for class org.labkey.remoteapi.query.DeleteRowsCommand
DeleteUserCommand - Class in org.labkey.remoteapi.security
  Deletes existing users based on userIds If it executed without exception, the users have been deleted
DeleteUserCommand(int) - Constructor for class org.labkey.remoteapi.security.DeleteUserCommand
DeleteUserCommand(DeleteUserCommand) - Constructor for class org.labkey.remoteapi.security.DeleteUserCommand

## E

ensureAuthenticated() - Method in class org.labkey.remoteapi.Connection
  Ensures that the credentials have been used to authenticate the users and returns a client that can be used for other requests
EnsureLoginCommand - Class in org.labkey.remoteapi.security
  Simply ensures that the connection is associated with an authenticated user.
EnsureLoginCommand() - Constructor for class org.labkey.remoteapi.security.EnsureLoginCommand
execute(Connection, String) - Method in class org.labkey.remoteapi.Command
  Executes the command in the given folder on the specified connection, and returns information about the response.
execute(Connection, String) - Method in interface org.labkey.remoteapi.query.BaseSelect
ExecuteSqlCommand - Class in org.labkey.remoteapi.query
  Command for executing arbitrary LabKey SQL.
ExecuteSqlCommand(String) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand
  Constructs an ExceuteSqlCommand, initialized with a schema name.
ExecuteSqlCommand(ExecuteSqlCommand) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand
ExecuteSqlCommand(String, String) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand
  Constructs an ExecuteSqlCommand, initialized with a schema name and SQL query.
ExpObject - Class in org.labkey.remoteapi.assay
  Base class for experiment objects, including Run, Data, Batch, etc User: jeckels Date: Apr 28, 2010
ExpObject() - Constructor for class org.labkey.remoteapi.assay.ExpObject
ExpObject(JSONObject) - Constructor for class org.labkey.remoteapi.assay.ExpObject

## F

FileNotificationCommand - Class in org.labkey.remoteapi.pipeline
  Notifies the server that files may have become available for the pipeline to process.
FileNotificationCommand() - Constructor for class org.labkey.remoteapi.pipeline.FileNotificationCommand
FileNotificationResponse - Class in org.labkey.remoteapi.pipeline
  Server response from FileNotificationCommand.
FileNotificationResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.pipeline.FileNotificationResponse
Filter - Class in org.labkey.remoteapi.query
  Represents a filter definition for a query
Filter(String, Object) - Constructor for class org.labkey.remoteapi.query.Filter
  Constructs a new equality Filter for the given column name and value.
Filter(String, Object, Filter.Operator) - Constructor for class org.labkey.remoteapi.query.Filter
  Constructs a filter with a given column name, value and operator.
Filter(Filter) - Constructor for class org.labkey.remoteapi.query.Filter
Filter.Operator - Enum in org.labkey.remoteapi.query
findContainer(String, Map<String, Object>) - Method in class org.labkey.remoteapi.security.GetContainersResponse
findContainer(String[], int, Map<String, Object>) - Method in class org.labkey.remoteapi.security.GetContainersResponse
findObject(List<Map<String, Object>>, String, String) - Method in class org.labkey.remoteapi.CommandResponse
  Finds, in a List of Maps, the first Map containing an entry that matches `propertyName` and `value` matches the `value` supplied.

## G

get(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
get(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
getAbsolutePath() - Method in class org.labkey.remoteapi.assay.Data
getActionName() - Method in class org.labkey.remoteapi.Command
  Returns the action name specified when constructing this object.
getActionUrl(Connection, String) - Method in class org.labkey.remoteapi.Command
  Returns the portion of the URL before the query string for this command.
getAllProperties() - Method in class org.labkey.remoteapi.ResponseObject
getAssayDescription() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse
getAssayId() - Method in class org.labkey.remoteapi.assay.ImportRunResponse
getAssayId() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse
getAssayId() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchResponse
getAssayName() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
getAssayName() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse
getAsymmetry() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
getBaseUrl() - Method in class org.labkey.remoteapi.Connection
  Returns the base URL for this connection.
getBatch() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchResponse
getBatchId() - Method in class org.labkey.remoteapi.assay.ImportRunResponse
getCaption() - Method in enum org.labkey.remoteapi.query.Filter.Operator
  Deprecated.
getCaption() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getCellControl() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getColumn() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell
getColumnDataType(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the data type for the requested column name.
getColumnModel() - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the column model section of the response.
getColumnModel(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the column properties for the specified column name.
getColumnName() - Method in class org.labkey.remoteapi.query.Filter
getColumnName() - Method in class org.labkey.remoteapi.query.Sort
getColumnNames(String) - Method in class org.labkey.remoteapi.query.GetQueriesResponse
  Returns the list of column names available in the given query name.
getColumns() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse
  Returns the columns available in the given query name.
getColumns() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Returns the explicit column list to be requested, or null if the default set of columns will be requested.
getCommand() - Method in class org.labkey.remoteapi.query.SaveRowsResponse
  Returns the 'command' response property.
getComment() - Method in class org.labkey.remoteapi.assay.Run
getContainerFilter() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Returns the container filter set for this command
getContainerFilter() - Method in interface org.labkey.remoteapi.query.BaseSelect
getContainerFilter() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns the container filter set for this command
getContainerId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getContainerId() - Method in class org.labkey.remoteapi.security.GetContainersResponse
getContainerPath() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getContainerPath() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
getContainerPath() - Method in class org.labkey.remoteapi.security.GetUsersResponse
GetContainersCommand - Class in org.labkey.remoteapi.security
GetContainersCommand() - Constructor for class org.labkey.remoteapi.security.GetContainersCommand
GetContainersCommand(GetContainersCommand) - Constructor for class org.labkey.remoteapi.security.GetContainersCommand
GetContainersResponse - Class in org.labkey.remoteapi.security
GetContainersResponse(String, int, String, JSONObject, GetContainersCommand) - Constructor for class org.labkey.remoteapi.security.GetContainersResponse
getContentType() - Method in class org.labkey.remoteapi.Command.Response
getContentType() - Method in class org.labkey.remoteapi.CommandResponse
  Returns the Content-Type header value from the response.
getControllerName() - Method in class org.labkey.remoteapi.Command
  Returns the controller name specified when constructing this object.
getCurveBasedDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult
getCutoff() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult
getCutoffs() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getDataFileURL() - Method in class org.labkey.remoteapi.assay.Data
getDataInputs() - Method in class org.labkey.remoteapi.assay.Run
getDataOutputs() - Method in class org.labkey.remoteapi.assay.Run
getDefinition(String) - Method in class org.labkey.remoteapi.assay.AssayListResponse
  Returns an assay definition for the assay identified by the specified name.
getDefinition(int) - Method in class org.labkey.remoteapi.assay.AssayListResponse
  Returns an assay definition for the assay identified by the specified id.
getDefinitions() - Method in class org.labkey.remoteapi.assay.AssayListResponse
  Returns the definitions section of the response.
getDeleteParticipantIds() - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand.UpdatedParticipantGroup
getDescription() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getDescription() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse
  Returns the description of the query described by this response
getDescription() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
getDescription() - Method in class org.labkey.remoteapi.study.ParticipantGroup
getDescriptionId() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate
getDirection() - Method in class org.labkey.remoteapi.query.Sort
getDisplayColumn() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
getDisplayName() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo
getDisplayValue() - Method in enum org.labkey.remoteapi.query.Filter.Operator
getDisplayValue(String) - Method in interface org.labkey.remoteapi.query.Row
  Returns a column's display value (if different from value).
getDisplayValue(String) - Method in class org.labkey.remoteapi.query.RowMap
getEmail() - Method in class org.labkey.remoteapi.security.CreateUserCommand
getEmail() - Method in class org.labkey.remoteapi.security.CreateUserResponse
getEmail() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo
getEnabled() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
getEnabled() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getEnsureParticipantIds() - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand.UpdatedParticipantGroup
getEntry(String) - Method in class org.labkey.remoteapi.NetrcFileParser
getEntry(File, String) - Method in class org.labkey.remoteapi.NetrcFileParser
getExtraContext() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Gets the additional extra context.
getFieldKey() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getFiles() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
getFilters() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Returns the current list of filters, or null if none are defined.
getFitError() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getFitParameters() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getFolderType() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
getGroup() - Method in class org.labkey.remoteapi.security.GetUsersCommand
getGroupId() - Method in class org.labkey.remoteapi.security.CreateGroupResponse
getGroupId() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand
getGroupId() - Method in class org.labkey.remoteapi.security.GetUsersCommand
getGroupId() - Method in class org.labkey.remoteapi.security.GroupMembersCommand
getGroupId() - Method in class org.labkey.remoteapi.security.RenameGroupCommand
GetGroupPermsCommand - Class in org.labkey.remoteapi.security
GetGroupPermsCommand() - Constructor for class org.labkey.remoteapi.security.GetGroupPermsCommand
GetGroupPermsCommand(GetGroupPermsCommand) - Constructor for class org.labkey.remoteapi.security.GetGroupPermsCommand
GetGroupPermsResponse - Class in org.labkey.remoteapi.security
GetGroupPermsResponse(String, int, String, JSONObject, GetGroupPermsCommand) - Constructor for class org.labkey.remoteapi.security.GetGroupPermsResponse
getHttpClient(int) - Method in class org.labkey.remoteapi.Connection
  Returns the CloseableHttpClient object to use for this connection.
getHttpRequest(Connection, String) - Method in class org.labkey.remoteapi.Command
  Returns the appropriate, initialized HttpUriRequest implementation.
getId() - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Returns the current assay id filter (if any).
getId() - Method in class org.labkey.remoteapi.assay.ExpObject
getId() - Method in class org.labkey.remoteapi.security.CreateContainerResponse
getIdColumn() - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the name of the column containing the primary key value for each row.
getInflection() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
getInputStream() - Method in class org.labkey.remoteapi.Command.Response
getJobId() - Method in class org.labkey.remoteapi.di.RunTransformResponse
getJsonObject() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand
getJsonObject() - Method in class org.labkey.remoteapi.di.BaseTransformCommand
getJsonObject() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
getJsonObject() - Method in class org.labkey.remoteapi.PostCommand
  Returns the JSON object to post, or null if the JSON object has not yet been set.
getJsonObject() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
getJsonObject() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Dynamically builds the JSON object to send based on the current schema name, query name and rows list.
getJsonObject() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.CreateGroupCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.CreateUserCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.DeleteUserCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.GroupMembersCommand
getJsonObject() - Method in class org.labkey.remoteapi.security.RenameGroupCommand
getJsonObject() - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand
getKeyColumn() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
getLabel() - Method in class org.labkey.remoteapi.study.ParticipantGroup
getLastChecked() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getLogin() - Method in class org.labkey.remoteapi.NetrcFileParser.NetrcEntry
getLookup() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getMachine() - Method in class org.labkey.remoteapi.NetrcFileParser.NetrcEntry
getMax() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
getMax() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
getMaxDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getMaxRows() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Returns the current row limit value.
getMaxRows() - Method in interface org.labkey.remoteapi.query.BaseSelect
getMaxRows() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns the current row limit value.
getMean() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
getMessage() - Method in class org.labkey.remoteapi.security.CreateUserResponse
getMetaData() - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the meta-data section of the response.
getMetaData(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the meta-data for a given column name.
getMin() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
getMin() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
getMinDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getMvRawValue(String) - Method in interface org.labkey.remoteapi.query.Row
  Returns the column's missing-value raw value.
getMvRawValue(String) - Method in class org.labkey.remoteapi.query.RowMap
getMvValue(String) - Method in interface org.labkey.remoteapi.query.Row
  Returns a column's missing-value indicator.
getMvValue(String) - Method in class org.labkey.remoteapi.query.RowMap
getName() - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Returns the assay name filter upon (if any)
getName() - Method in class org.labkey.remoteapi.assay.ExpObject
getName() - Method in enum org.labkey.remoteapi.query.Filter.Operator
  Deprecated.
getName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse
  Returns the query name that is described by this response
getName() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
getName() - Method in class org.labkey.remoteapi.security.CreateContainerResponse
getName() - Method in class org.labkey.remoteapi.security.CreateGroupCommand
getName() - Method in class org.labkey.remoteapi.security.GetUsersCommand
getNeutPercent() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate
getNeutPlusMinus() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate
getNeutralizationResults() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getNewName() - Method in class org.labkey.remoteapi.security.RenameGroupCommand
getNewName() - Method in class org.labkey.remoteapi.security.RenameGroupResponse
getObjectId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getOffset() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Returns the index of the first row in the resultset to return (defaults to 0).
getOffset() - Method in interface org.labkey.remoteapi.query.BaseSelect
getOffset() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns the index of the first row in the resultset to return (defaults to 0).
getOldName() - Method in class org.labkey.remoteapi.security.RenameGroupResponse
getOperator() - Method in class org.labkey.remoteapi.query.Filter
getOperator(String) - Static method in enum org.labkey.remoteapi.query.Filter.Operator
getParameters() - Method in class org.labkey.remoteapi.assay.AssayListCommand
getParameters() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
getParameters() - Method in class org.labkey.remoteapi.Command
  Returns the current parameter map, or null if a map has not yet been set.
getParameters() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
getParameters() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
getParameters() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
getParameters() - Method in class org.labkey.remoteapi.query.GetQueriesCommand
getParameters() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
getParameters() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
getParameters() - Method in class org.labkey.remoteapi.security.GetContainersCommand
getParameters() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand
getParameters() - Method in class org.labkey.remoteapi.security.GetUsersCommand
getParameters() - Method in class org.labkey.remoteapi.study.CheckForStudyReloadCommand
getParamValueAsString(Object, String) - Method in class org.labkey.remoteapi.Command
  Returns an appropriate string encoding of the parameter value.
getParsedData() - Method in class org.labkey.remoteapi.CommandResponse
  Attempts to parse the response text and return a property Map.
getParticipantGroup() - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupResponse
getParticipantIds() - Method in class org.labkey.remoteapi.study.ParticipantGroup
getPassword() - Method in class org.labkey.remoteapi.NetrcFileParser.NetrcEntry
getPath() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
getPath() - Method in class org.labkey.remoteapi.security.CreateContainerResponse
getPipelinePath() - Method in class org.labkey.remoteapi.assay.Data
getPipelineURL() - Method in class org.labkey.remoteapi.di.RunTransformResponse
getPointBasedDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult
getPrincipals() - Method in class org.labkey.remoteapi.security.GroupMembersCommand
getProgrammaticName() - Method in enum org.labkey.remoteapi.query.Filter.Operator
getProperties() - Method in class org.labkey.remoteapi.assay.ExpObject
getProperties() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getProperties() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getProperties() - Method in exception org.labkey.remoteapi.CommandException
  Returns the exception property map, or null if no map was set.
getProperties() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getProperty(String) - Method in class org.labkey.remoteapi.CommandResponse
  Returns the value of a specific property in the parsed data given a path to that property.
getProperty(String[], int, Map<String, Object>) - Method in class org.labkey.remoteapi.CommandResponse
  Called by `CommandResponse.getProperty(String)` after splitting the path into a String[], and recursively by itself as it descends the property hierarchy.
getProtocol() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
GetQueriesCommand - Class in org.labkey.remoteapi.query
  Command for obtaining the list of queries available within a given schema.
GetQueriesCommand(String) - Constructor for class org.labkey.remoteapi.query.GetQueriesCommand
  Constructs the command given a particular schema name.
GetQueriesCommand(GetQueriesCommand) - Constructor for class org.labkey.remoteapi.query.GetQueriesCommand
GetQueriesResponse - Class in org.labkey.remoteapi.query
  Represents the response from a GetQueriesCommand.
GetQueriesResponse(String, int, String, JSONObject, GetQueriesCommand) - Constructor for class org.labkey.remoteapi.query.GetQueriesResponse
GetQueryDetailsCommand - Class in org.labkey.remoteapi.query
  Command for obtaining the list of queries available within a given schema.
GetQueryDetailsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsCommand
  Constructs the command given a particular schema name.
GetQueryDetailsCommand(GetQueryDetailsCommand) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsCommand
GetQueryDetailsResponse - Class in org.labkey.remoteapi.query
  Represents the response from a GetQueriesCommand.
GetQueryDetailsResponse(String, int, String, JSONObject, GetQueryDetailsCommand) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsResponse
GetQueryDetailsResponse.Column - Class in org.labkey.remoteapi.query
GetQueryDetailsResponse.Lookup - Class in org.labkey.remoteapi.query
getQueryName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
getQueryName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
getQueryName() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Returns the query name
getQueryName() - Method in class org.labkey.remoteapi.query.SaveRowsResponse
  Returns the 'queryName' response property.
getQueryName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Returns the query this command will request.
getQueryNames() - Method in class org.labkey.remoteapi.query.GetQueriesResponse
  Returns the list of available query names in the given schema.
getQueryParameters() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Map of name (string)/value pairs for the values of parameters if the SQL references underlying queries that are parameterized.
getQueryParameters() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Map of name (string)/value pairs for the values of parameters if the SQL references underlying queries that are parameterized.
getQueryString() - Method in class org.labkey.remoteapi.Command
  Returns the query string portion of the URL for this command.
getQueryStringParamName() - Method in class org.labkey.remoteapi.query.Filter
  Returns the query string parameter name for this filter.
getQueryStringParamValue() - Method in class org.labkey.remoteapi.query.Filter
  Returns the query string parameter value (not URL-encoded).
getReplicates() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getRequiredVersion() - Method in class org.labkey.remoteapi.Command
  Returns the required version number of this API call.
getRequiredVersion() - Method in class org.labkey.remoteapi.CommandResponse
  Returns the API version number required by the source command.
getRequiredVersion() - Method in interface org.labkey.remoteapi.query.BaseSelect
getResponseText() - Method in exception org.labkey.remoteapi.CommandException
  Returns the text of the response
getResult() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getRow() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell
getRowCount() - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns the number of rows this query could return.
getRowId() - Method in class org.labkey.remoteapi.study.ParticipantGroup
getRows() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Returns the current list of 'rows' (i.e., Maps) that will be sent to the server.
getRowsAffected() - Method in class org.labkey.remoteapi.query.SaveRowsResponse
  Returns the 'rowsAffected' response property.
getRowset() - Method in class org.labkey.remoteapi.query.SelectRowsResponse
  Returns an iterable Rowset.
getRunId() - Method in class org.labkey.remoteapi.assay.ImportRunResponse
getRunId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getRuns() - Method in class org.labkey.remoteapi.assay.Batch
getRuns() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse
getSamples() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getSchemaName() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns the current schema name.
getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueriesCommand
getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueriesResponse
  Returns the schema name the queries in this response belong to.
getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse
  Returns the schema name the query in this response belongs to.
getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
getSchemaName() - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Returns the schema name.
getSchemaName() - Method in class org.labkey.remoteapi.query.SaveRowsResponse
  Returns the 'schemaName' response property.
getSchemaName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Returns the current schema name this command will query.
getSchemaNames() - Method in class org.labkey.remoteapi.query.GetSchemasResponse
  Returns the list of schema names available in the folder path in which this command was executed.
GetSchemasCommand - Class in org.labkey.remoteapi.query
  Command to obtain the list of schemas available in a given folder path.
GetSchemasCommand() - Constructor for class org.labkey.remoteapi.query.GetSchemasCommand
GetSchemasCommand(GetSchemasCommand) - Constructor for class org.labkey.remoteapi.query.GetSchemasCommand
GetSchemasResponse - Class in org.labkey.remoteapi.query
  Represents the response of a GetSchemasCommand.
GetSchemasResponse(String, int, String, JSONObject, GetSchemasCommand) - Constructor for class org.labkey.remoteapi.query.GetSchemasResponse
getSize() - Method in interface org.labkey.remoteapi.query.Rowset
getSize() - Method in class org.labkey.remoteapi.query.RowsResponseRowset
getSlope() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
getSortQueryStringParam(List<Sort>) - Static method in class org.labkey.remoteapi.query.Sort
  Constructs the sort query string parameter from the current list of sort definitions.
getSorts() - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Returns the current list of sort definitions.
getSorts() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  A sort specification to apply over the rows returned by the SQL.
getSourceCommand() - Method in class org.labkey.remoteapi.CommandResponse
  Returns a reference to a copy of the command that created this response
getSql() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns the current SQL query.
getState() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getStatus() - Method in class org.labkey.remoteapi.di.RunTransformResponse
getStatusCode() - Method in class org.labkey.remoteapi.Command.Response
getStatusCode() - Method in exception org.labkey.remoteapi.CommandException
  Returns the HTTP status code returned by the server.
getStatusCode() - Method in class org.labkey.remoteapi.CommandResponse
  Returns the HTTP status code (typically 200).
getStatusText() - Method in class org.labkey.remoteapi.Command.Response
getStddev() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
getSuccess() - Method in class org.labkey.remoteapi.di.BaseTransformResponse
getSuccessURL() - Method in class org.labkey.remoteapi.assay.ImportRunResponse
getText() - Method in class org.labkey.remoteapi.Command.Response
getText() - Method in class org.labkey.remoteapi.CommandResponse
  Returns the raw response text.
getTimeout() - Method in class org.labkey.remoteapi.Command
  Returns the current timeout setting in milliseconds for this Command.
getTimeout() - Method in class org.labkey.remoteapi.Connection
  The timeout used for Commands that have not established their own timeouts.
getTitle() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse
  Returns the title of the query described by this response (often the same as the name, but not always)
getTitle() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
getTransformId() - Method in class org.labkey.remoteapi.di.BaseTransformCommand
getType() - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Returns the current assay type filter (if any).
getType() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
getUrl(String) - Method in interface org.labkey.remoteapi.query.Row
  Returns a column's URL
getUrl(String) - Method in class org.labkey.remoteapi.query.RowMap
getUrlKey() - Method in enum org.labkey.remoteapi.query.Filter.Operator
getUserId() - Method in class org.labkey.remoteapi.security.CreateUserResponse
getUserId() - Method in class org.labkey.remoteapi.security.DeleteUserCommand
getUserId() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo
getUserPermissions() - Method in class org.labkey.remoteapi.security.GetContainersResponse
getUserPermissions(String) - Method in class org.labkey.remoteapi.security.GetContainersResponse
GetUsersCommand - Class in org.labkey.remoteapi.security
  Returns a list of users given selection criteria.
GetUsersCommand() - Constructor for class org.labkey.remoteapi.security.GetUsersCommand
GetUsersCommand(Command, String, int, String) - Constructor for class org.labkey.remoteapi.security.GetUsersCommand
getUsersInfo() - Method in class org.labkey.remoteapi.security.GetUsersResponse
GetUsersResponse - Class in org.labkey.remoteapi.security
  The result of a GetUsersCommand request.
GetUsersResponse(String, int, String, JSONObject, GetUsersCommand) - Constructor for class org.labkey.remoteapi.security.GetUsersResponse
GetUsersResponse.UserInfo - Class in org.labkey.remoteapi.security
  Information about a single user that matched the request
getValue() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell
getValue() - Method in class org.labkey.remoteapi.query.Filter
getValue(String) - Method in interface org.labkey.remoteapi.query.Row
  Returns a column's raw value.
getValue(String) - Method in class org.labkey.remoteapi.query.RowMap
getVerboseLogging() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
getVerboseLogging() - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
getViewName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Returns the current saved view name this command will request.
getVirusControl() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun
getWellgroupName() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample
getWells() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
GroupMembersCommand - Class in org.labkey.remoteapi.security
  Base class for AddGroupMembersCommand and RemoveGroupMembersCommand
GroupMembersCommand(String, int) - Constructor for class org.labkey.remoteapi.security.GroupMembersCommand
GroupMembersCommand(GroupMembersCommand) - Constructor for class org.labkey.remoteapi.security.GroupMembersCommand
GuestCredentialsProvider - Class in org.labkey.remoteapi
  A credentials provider that provides no credentials.
GuestCredentialsProvider() - Constructor for class org.labkey.remoteapi.GuestCredentialsProvider

## H

hasPermission(int) - Method in class org.labkey.remoteapi.security.GetContainersResponse
hasPermission(int, String) - Method in class org.labkey.remoteapi.security.GetContainersResponse

## I

ImportRunCommand - Class in org.labkey.remoteapi.assay
  Import a new assay run.
ImportRunCommand(int, File) - Constructor for class org.labkey.remoteapi.assay.ImportRunCommand
ImportRunResponse - Class in org.labkey.remoteapi.assay
  User: kevink Date: 9/12/12
ImportRunResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.assay.ImportRunResponse
InsertRowsCommand - Class in org.labkey.remoteapi.query
  Command for inserting rows into a table in a read-write schema.
InsertRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.InsertRowsCommand
  Constructs an InsertRowsCommand for the given schemaName and queryName.
InsertRowsCommand(InsertRowsCommand) - Constructor for class org.labkey.remoteapi.query.InsertRowsCommand
isAcceptSelfSignedCerts() - Method in class org.labkey.remoteapi.Connection
  Returns true if the connection should accept a self-signed SSL certificate when using HTTPS, false otherwise.
isAutoIncrement() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isCalculated() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isCalculateNeut() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
isDataValueRequired() - Method in enum org.labkey.remoteapi.query.Filter.Operator
isExtendedFormat() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Returns whether the extended format will be requested.
isExtendedFormat() - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Returns whether the extended format will be requested.
isHidden() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isIncludeColumns() - Method in class org.labkey.remoteapi.query.GetQueriesCommand
isIncludeDetailsColumn() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Include the Details link column in the set of columns (defaults to false).
isIncludeFitParameters() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
isIncludeStats() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
isIncludeSubfolders() - Method in class org.labkey.remoteapi.security.GetContainersCommand
isIncludeSubfolders() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand
  Returns whether the command will recurse down the subfolders of the folder in which the command is executed.
isIncludeTotalCount() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Include the total number of rows available (defaults to true).
isIncludeUserQueries() - Method in class org.labkey.remoteapi.query.GetQueriesCommand
isIncludeWells() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
isKeyField() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isMvEnabled() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isNullable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isPublic() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup
isReadOnly() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isSaveInSession() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Whether or not the definition of this query should be stored for reuse during the current session.
isSelectable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isSendEmail() - Method in class org.labkey.remoteapi.security.CreateUserCommand
isUserEditable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isValueRequired() - Method in enum org.labkey.remoteapi.query.Filter.Operator
  Deprecated.
isVersionField() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column
isWorkbook() - Method in class org.labkey.remoteapi.security.CreateContainerCommand
iterator() - Method in class org.labkey.remoteapi.query.RowsResponseRowset

## L

Lookup(Map<String, Object>) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

## N

NAbCurveParameters - Class in org.labkey.remoteapi.assay.nab.model
NAbCurveParameters(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters
NAbNeutralizationResult - Class in org.labkey.remoteapi.assay.nab.model
NAbNeutralizationResult(long, double, double) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult
NAbReplicate - Class in org.labkey.remoteapi.assay.nab.model
NAbReplicate(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbReplicate
NAbRun - Class in org.labkey.remoteapi.assay.nab.model
NAbRun(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbRun
NAbRunsCommand - Class in org.labkey.remoteapi.assay.nab
  Command for obtaining information about the current assay definitions in a particular folder.
NAbRunsCommand() - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsCommand
  Constructs a new AssayListCommand object.
NAbRunsCommand(NAbRunsCommand) - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsCommand
  Constructs a new NAbRunsCommand which is a copy of the source command
NAbRunsResponse - Class in org.labkey.remoteapi.assay.nab
  Response class for the `NAbRunsCommand`.
NAbRunsResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.
NAbSample - Class in org.labkey.remoteapi.assay.nab.model
NAbSample(Map<String, Object>, long[]) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbSample
NAbWell - Class in org.labkey.remoteapi.assay.nab.model
NAbWell(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbWell
NAbWellGroup - Class in org.labkey.remoteapi.assay.nab.model
NAbWellGroup(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbWellGroup
NetrcCredentialsProvider - Class in org.labkey.remoteapi
  Attempts to find a .netrc or _netrc file and entry for the given host.
NetrcCredentialsProvider(URI) - Constructor for class org.labkey.remoteapi.NetrcCredentialsProvider
  Attempt netrc lookup for the URI's host.
NetrcCredentialsProvider(String) - Constructor for class org.labkey.remoteapi.NetrcCredentialsProvider
  Attempt netrc lookup for the given host.
NetrcFileParser - Class in org.labkey.remoteapi
  User: adam Date: Jan 10, 2009 Time: 6:30:14 PM
NetrcFileParser() - Constructor for class org.labkey.remoteapi.NetrcFileParser
NetrcFileParser.NetrcEntry - Class in org.labkey.remoteapi

## O

org.labkey.remoteapi - package org.labkey.remoteapi
org.labkey.remoteapi.assay - package org.labkey.remoteapi.assay
org.labkey.remoteapi.assay.nab - package org.labkey.remoteapi.assay.nab
org.labkey.remoteapi.assay.nab.model - package org.labkey.remoteapi.assay.nab.model
org.labkey.remoteapi.collections - package org.labkey.remoteapi.collections
org.labkey.remoteapi.di - package org.labkey.remoteapi.di
org.labkey.remoteapi.ms2 - package org.labkey.remoteapi.ms2
org.labkey.remoteapi.pipeline - package org.labkey.remoteapi.pipeline
org.labkey.remoteapi.query - package org.labkey.remoteapi.query
org.labkey.remoteapi.security - package org.labkey.remoteapi.security
org.labkey.remoteapi.study - package org.labkey.remoteapi.study

## P

parse(String) - Method in class org.labkey.remoteapi.query.DateParser
parseJsonType(String) - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType
ParticipantGroup - Class in org.labkey.remoteapi.study
  A client-side representation of a participant group from a study on the server.
ParticipantGroup() - Constructor for class org.labkey.remoteapi.study.ParticipantGroup
PERM_ADMIN - Static variable in class org.labkey.remoteapi.security.ACL
PERM_ALLOWALL - Static variable in class org.labkey.remoteapi.security.ACL
PERM_DELETE - Static variable in class org.labkey.remoteapi.security.ACL
PERM_DELETEOWN - Static variable in class org.labkey.remoteapi.security.ACL
PERM_INSERT - Static variable in class org.labkey.remoteapi.security.ACL
PERM_NONE - Static variable in class org.labkey.remoteapi.security.ACL
PERM_READ - Static variable in class org.labkey.remoteapi.security.ACL
PERM_READOWN - Static variable in class org.labkey.remoteapi.security.ACL
PERM_UPDATE - Static variable in class org.labkey.remoteapi.security.ACL
PERM_UPDATEOWN - Static variable in class org.labkey.remoteapi.security.ACL
PostCommand<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi
  Base class for all commands that needs to post data to the server, rather than providing parameters in the query string.
PostCommand(String, String) - Constructor for class org.labkey.remoteapi.PostCommand
  Constructs a new PostCommand given a controller and action name.
PostCommand(PostCommand) - Constructor for class org.labkey.remoteapi.PostCommand
put(String, V) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

## R

remove(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
remove(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap
RemoveGroupMembersCommand - Class in org.labkey.remoteapi.security
  Removes a set of principals from a security group.
RemoveGroupMembersCommand(int) - Constructor for class org.labkey.remoteapi.security.RemoveGroupMembersCommand
RenameGroupCommand - Class in org.labkey.remoteapi.security
  Renames an existing group.
RenameGroupCommand(int, String) - Constructor for class org.labkey.remoteapi.security.RenameGroupCommand
RenameGroupCommand(RenameGroupCommand) - Constructor for class org.labkey.remoteapi.security.RenameGroupCommand
RenameGroupResponse - Class in org.labkey.remoteapi.security
RenameGroupResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.RenameGroupResponse
ResetTransformStateCommand - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
ResetTransformStateCommand(RunTransformCommand) - Constructor for class org.labkey.remoteapi.di.ResetTransformStateCommand
ResetTransformStateCommand(String) - Constructor for class org.labkey.remoteapi.di.ResetTransformStateCommand
  Reset an ETL transform to its initial state, as if it has never been run
ResetTransformStateResponse - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
ResetTransformStateResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.di.ResetTransformStateResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.
ResponseObject - Class in org.labkey.remoteapi
  User: jeckels Date: Apr 3, 2010
ResponseObject(Map<String, Object>) - Constructor for class org.labkey.remoteapi.ResponseObject
Row - Interface in org.labkey.remoteapi.query
  Provides a format-neutral way of obtaining a row's value.
RowMap - Class in org.labkey.remoteapi.query
RowMap() - Constructor for class org.labkey.remoteapi.query.RowMap
RowMap(Map<String, Object>) - Constructor for class org.labkey.remoteapi.query.RowMap
Rowset - Interface in org.labkey.remoteapi.query
  Provides an iterable interface over the response rows that hides the differences between the simple and extended response formats.
RowsResponseRowset - Class in org.labkey.remoteapi.query
RowsResponseRowset(List<Map<String, Object>>) - Constructor for class org.labkey.remoteapi.query.RowsResponseRowset
Run - Class in org.labkey.remoteapi.assay
  Represents a single assay run User: jeckels Date: Apr 28, 2010
Run() - Constructor for class org.labkey.remoteapi.assay.Run
Run(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Run
RunTransformCommand - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
RunTransformCommand(RunTransformCommand) - Constructor for class org.labkey.remoteapi.di.RunTransformCommand
RunTransformCommand(String) - Constructor for class org.labkey.remoteapi.di.RunTransformCommand
RunTransformResponse - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
RunTransformResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.di.RunTransformResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.

## S

SaveAssayBatchCommand - Class in org.labkey.remoteapi.assay
  Saves an assay batch on the server.
SaveAssayBatchCommand(int) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchCommand
SaveAssayBatchCommand(int, Batch) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchCommand
SaveAssayBatchResponse - Class in org.labkey.remoteapi.assay
  User: jeckels Date: Apr 28, 2010
SaveAssayBatchResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchResponse
SaveRowsCommand - Class in org.labkey.remoteapi.query
  Base class for commands that make changes to rows exposed from a given query in a given schema.
SaveRowsCommand(String, String, String) - Constructor for class org.labkey.remoteapi.query.SaveRowsCommand
  Constructs a new SaveRowsCommand for a given schema, query and action name.
SaveRowsCommand(SaveRowsCommand) - Constructor for class org.labkey.remoteapi.query.SaveRowsCommand
SaveRowsResponse - Class in org.labkey.remoteapi.query
  Response object used for commands that derive from SaveRowsCommand.
SaveRowsResponse(String, int, String, JSONObject, SaveRowsCommand) - Constructor for class org.labkey.remoteapi.query.SaveRowsResponse
  Constructs a new SaveRowsResponse given the response text and status code
SelectRowsCommand - Class in org.labkey.remoteapi.query
  Command for selecting data from any LabKey schema/query exposed on the server identified by the Connection object supplied to the `Command.execute(org.labkey.remoteapi.Connection, String)` method.
SelectRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.SelectRowsCommand
  Constructs a new SelectRowsCommand for the given schema and query name.
SelectRowsCommand(SelectRowsCommand) - Constructor for class org.labkey.remoteapi.query.SelectRowsCommand
  Constructs a new SelectRowsCommand that is a copy of the source command
SelectRowsResponse - Class in org.labkey.remoteapi.query
  The command response class returned from the `Command.execute(org.labkey.remoteapi.Connection, String)` method.
SelectRowsResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.query.SelectRowsResponse
  Constructs a new SelectRowsResponse given the response text and HTTP status code.
SelectRowsResponse.ColumnDataType - Enum in org.labkey.remoteapi.query
  An enumeration of the possible column data types
setAbsolutePath(String) - Method in class org.labkey.remoteapi.assay.Data
setAcceptSelfSignedCerts(boolean) - Method in class org.labkey.remoteapi.Connection
  Sets the accept self-signed certificates option.
setAssayName(String) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
setBatchId(int) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setBatchProperties(Map<String, Object>) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setCalculateNeut(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
setColumnName(String) - Method in class org.labkey.remoteapi.query.Filter
setColumnName(String) - Method in class org.labkey.remoteapi.query.Sort
setColumns(List<String>) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Sets an explicit list of columns to request.
setComment(String) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setComment(String) - Method in class org.labkey.remoteapi.assay.Run
setContainerFilter(ContainerFilter) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Sets the container filter for the sql to be executed.
setContainerFilter(ContainerFilter) - Method in interface org.labkey.remoteapi.query.BaseSelect
setContainerFilter(ContainerFilter) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Sets the container filter for the sql to be executed.
setDataFileURL(String) - Method in class org.labkey.remoteapi.assay.Data
setDataInputs(List<Data>) - Method in class org.labkey.remoteapi.assay.Run
setDataOutputs(List<Data>) - Method in class org.labkey.remoteapi.assay.Run
setDeleteParticipantIds(Set<String>) - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand.UpdatedParticipantGroup
setDescription(String) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
setDescription(String) - Method in class org.labkey.remoteapi.study.ParticipantGroup
setDirection(Sort.Direction) - Method in class org.labkey.remoteapi.query.Sort
setEmail(String) - Method in class org.labkey.remoteapi.security.CreateUserCommand
  Set the email address for the new user.
setEnabled(boolean) - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
setEnsureParticipantIds(Set<String>) - Method in class org.labkey.remoteapi.study.UpdateParticipantGroupCommand.UpdatedParticipantGroup
setExtendedFormat(boolean) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Set to true to request the extended response format, which includes URLs, Missing-Value indicators and display values in addition to the raw values.
setExtendedFormat(boolean) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Set to true to request the extended response format, which includes URLs, Missing-Value indicators and display values in addition to the raw values.
setExtraContext(Map<String, Object>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Sets the additional extra context.
setFile(File) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setFiles(List<String>) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
setFilters(List<Filter>) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Sets the current list of filters.
setFolderType(String) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
setGroup(String) - Method in class org.labkey.remoteapi.security.GetUsersCommand
setGroupId(int) - Method in class org.labkey.remoteapi.security.DeleteGroupCommand
setGroupId(int) - Method in class org.labkey.remoteapi.security.GetUsersCommand
setGroupId(int) - Method in class org.labkey.remoteapi.security.GroupMembersCommand
setGroupId(int) - Method in class org.labkey.remoteapi.security.RenameGroupCommand
setId(Integer) - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Sets the current assay id filter.
setId(int) - Method in class org.labkey.remoteapi.assay.ExpObject
setIncludeColumns(boolean) - Method in class org.labkey.remoteapi.query.GetQueriesCommand
  Pass false to omit information about the columns within each query.
setIncludeDetailsColumn(boolean) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Include the Details link column in the set of columns (defaults to false).
setIncludeFitParameters(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
setIncludeStats(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
setIncludeSubfolders(boolean) - Method in class org.labkey.remoteapi.security.GetContainersCommand
setIncludeSubfolders(boolean) - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand
  Sets whether this command should recurse down the subfolders of the folder in which the command is executed.
setIncludeTotalCount(boolean) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Include the total number of rows available (defaults to true).
setIncludeUserQueries(boolean) - Method in class org.labkey.remoteapi.query.GetQueriesCommand
  Pass false to this method to omit user-defined queries from the results.
setIncludeWells(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand
setJsonObject(JSONObject) - Method in class org.labkey.remoteapi.PostCommand
  Sets the JSON object to post.
setLabel(String) - Method in class org.labkey.remoteapi.study.ParticipantGroup
setMap(Map<String, Object>) - Method in class org.labkey.remoteapi.query.RowMap
setMaxRows(int) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Sets the current row limit value.
setMaxRows(int) - Method in interface org.labkey.remoteapi.query.BaseSelect
setMaxRows(int) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Sets the current row limit value.
setName(String) - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Sets the assay name to filter upon.
setName(String) - Method in class org.labkey.remoteapi.assay.ExpObject
setName(String) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setName(String) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
setName(String) - Method in class org.labkey.remoteapi.security.CreateGroupCommand
setName(String) - Method in class org.labkey.remoteapi.security.GetUsersCommand
setNewName(String) - Method in class org.labkey.remoteapi.security.RenameGroupCommand
setOffset(int) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Sets the index of the first row in the resultset to return from the server.
setOffset(int) - Method in interface org.labkey.remoteapi.query.BaseSelect
setOffset(int) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Sets the index of the first row in the resultset to return from the server.
setOperator(Filter.Operator) - Method in class org.labkey.remoteapi.query.Filter
setParameters(Map<String, Object>) - Method in class org.labkey.remoteapi.Command
  Sets the current parameter map.
setParticipantIds(Set<String>) - Method in class org.labkey.remoteapi.study.ParticipantGroup
setPath(String) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
setPipelinePath(String) - Method in class org.labkey.remoteapi.assay.Data
setProperties(Map<String, Object>) - Method in class org.labkey.remoteapi.assay.ExpObject
setProperties(Map<String, Object>) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setProtocol(String) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand
setQueryName(String) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
setQueryName(String) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Sets a new query name to update
setQueryName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Sets the query name this command will request.
setQueryParameters(Map<String, String>) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Map of name (string)/value pairs for the values of parameters if the SQL references underlying queries that are parameterized.
setQueryParameters(Map<String, String>) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Map of name (string)/value pairs for the values of parameters if the SQL references underlying queries that are parameterized.
setRequiredVersion(double) - Method in class org.labkey.remoteapi.Command
  Sets the required version number for this API call.
setRequiredVersion(double) - Method in interface org.labkey.remoteapi.query.BaseSelect
setResultData(List<Map<String, Object>>) - Method in class org.labkey.remoteapi.assay.Run
setRowId(Integer) - Method in class org.labkey.remoteapi.study.ParticipantGroup
setRows(List<Map<String, Object>>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Sets the list of 'rows' (i.e., Maps) to be sent to the server.
setRuns(List<Run>) - Method in class org.labkey.remoteapi.assay.Batch
setSaveInSession(boolean) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Whether or not the definition of this query should be stored for reuse during the current session.
setSchemaName(String) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Sets the current schema name.
setSchemaName(String) - Method in class org.labkey.remoteapi.query.GetQueriesCommand
setSchemaName(String) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand
setSchemaName(String) - Method in class org.labkey.remoteapi.query.SaveRowsCommand
  Sets the schema name
setSchemaName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Sets the schema name this command will query.
setSendEmail(boolean) - Method in class org.labkey.remoteapi.security.CreateUserCommand
  Set to true to send email to the user with login instructions, false to skip email.
setSort(List<Sort>) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  A sort specification to apply over the rows returned by the SQL.
setSorts(List<Sort>) - Method in class org.labkey.remoteapi.query.BaseQueryCommand
  Sets the current set of sort definitions.
setSql(String) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand
  Sets the SQL query to execute.
setTimeout(Integer) - Method in class org.labkey.remoteapi.Command
  Sets the timeout for this Command.
setTimeout(Integer) - Method in class org.labkey.remoteapi.Connection
  Set a default timeout for Commands that have not established their own timeouts.
setTitle(String) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
setTransformId(String) - Method in class org.labkey.remoteapi.di.BaseTransformCommand
setType(String) - Method in class org.labkey.remoteapi.assay.AssayListCommand
  Sets the assay type filter.
setUseJson(boolean) - Method in class org.labkey.remoteapi.assay.ImportRunCommand
setUserId(int) - Method in class org.labkey.remoteapi.security.DeleteUserCommand
setValue(Object) - Method in class org.labkey.remoteapi.query.Filter
setVerboseLogging(boolean) - Method in class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
setViewName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand
  Sets a particular saved view to request.
setWorkbook(boolean) - Method in class org.labkey.remoteapi.security.CreateContainerCommand
Sort - Class in org.labkey.remoteapi.query
  Represents a particular sort order entry, which consists of a column name and an optional direction
Sort(String) - Constructor for class org.labkey.remoteapi.query.Sort
Sort(String, Sort.Direction) - Constructor for class org.labkey.remoteapi.query.Sort
Sort(Sort) - Constructor for class org.labkey.remoteapi.query.Sort
Sort.Direction - Enum in org.labkey.remoteapi.query
StartSearchCommand - Class in org.labkey.remoteapi.ms2
  Initiates an MS2 search.
StartSearchCommand(StartSearchCommand.SearchEngine, String, String, List<String>) - Constructor for class org.labkey.remoteapi.ms2.StartSearchCommand
StartSearchCommand.SearchEngine - Enum in org.labkey.remoteapi.ms2
  The set of supported search engines, which may or may not be available on any given server
StartSearchResponse - Class in org.labkey.remoteapi.ms2
  User: jeckels Date: Feb 11, 2011
StartSearchResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.ms2.StartSearchResponse

## T

toJSON(Map<String, Object>) - Method in class org.labkey.remoteapi.assay.ExpObject
  Temp Fix for Issue: 23708 The Simple JSON library isn't properly serializing Dates, and generates invalid JSON.
toJSONObject() - Method in class org.labkey.remoteapi.assay.Batch
toJSONObject() - Method in class org.labkey.remoteapi.assay.Data
toJSONObject() - Method in class org.labkey.remoteapi.assay.ExpObject
toJSONObject() - Method in class org.labkey.remoteapi.assay.Run
toQueryStringParam() - Method in class org.labkey.remoteapi.query.Sort
toString() - Method in class org.labkey.remoteapi.query.Filter
toString() - Method in class org.labkey.remoteapi.query.RowMap

## U

UpdatedParticipantGroup() - Constructor for class org.labkey.remoteapi.study.UpdateParticipantGroupCommand.UpdatedParticipantGroup
UpdateParticipantGroupCommand - Class in org.labkey.remoteapi.study
  Request to be sent to the server to update an existing participant group User: jeckels Date: 12/11/13
UpdateParticipantGroupCommand(ParticipantGroup) - Constructor for class org.labkey.remoteapi.study.UpdateParticipantGroupCommand
UpdateParticipantGroupCommand.UpdatedParticipantGroup - Class in org.labkey.remoteapi.study
  Special subclass that allows specifying just participants that should be added or removed, without needing to specify the full set of participants.
UpdateParticipantGroupResponse - Class in org.labkey.remoteapi.study
  Result of making a request to the server to update an existing participant group User: jeckels Date: 12/11/13
UpdateParticipantGroupResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.study.UpdateParticipantGroupResponse
UpdateRowsCommand - Class in org.labkey.remoteapi.query
  Command for updating rows into a table in a read-write schema.
UpdateRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.UpdateRowsCommand
  Constructs an UpdateRowsCommand for the given schemaName and queryName.
UpdateRowsCommand(UpdateRowsCommand) - Constructor for class org.labkey.remoteapi.query.UpdateRowsCommand
UpdateTransformConfigurationCommand - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
UpdateTransformConfigurationCommand(UpdateTransformConfigurationCommand) - Constructor for class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
UpdateTransformConfigurationCommand(String) - Constructor for class org.labkey.remoteapi.di.UpdateTransformConfigurationCommand
UpdateTransformConfigurationResponse - Class in org.labkey.remoteapi.di
  User: tgaluhn Date: 10/29/13
UpdateTransformConfigurationResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.di.UpdateTransformConfigurationResponse
  Constructs a new CommandResponse, initialized with the provided response text and status code.

## V

valueOf(String) - Static method in enum org.labkey.remoteapi.Command.CommonParameters
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.labkey.remoteapi.ms2.StartSearchCommand.SearchEngine
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.labkey.remoteapi.query.ContainerFilter
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.labkey.remoteapi.query.Filter.Operator
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType
  Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.labkey.remoteapi.query.Sort.Direction
  Returns the enum constant of this type with the specified name.
values() - Static method in enum org.labkey.remoteapi.Command.CommonParameters
  Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.labkey.remoteapi.ms2.StartSearchCommand.SearchEngine
  Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.labkey.remoteapi.query.ContainerFilter
  Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.labkey.remoteapi.query.Filter.Operator
  Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType
  Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.labkey.remoteapi.query.Sort.Direction
  Returns an array containing the constants of this enum type, in the order they are declared.

## _

_allProperties - Variable in class org.labkey.remoteapi.ResponseObject
_containerFilter - Variable in class org.labkey.remoteapi.query.BaseQueryCommand
_execute(Connection, String) - Method in class org.labkey.remoteapi.Command
  NOTE: Internal experimental API for handling streaming commands.
_filters - Variable in class org.labkey.remoteapi.query.BaseQueryCommand
_maxRows - Variable in class org.labkey.remoteapi.query.BaseQueryCommand
_offset - Variable in class org.labkey.remoteapi.query.BaseQueryCommand
_sorts - Variable in class org.labkey.remoteapi.query.BaseQueryCommand
_transformId - Variable in class org.labkey.remoteapi.di.BaseTransformCommand

A B C D E F G H I L N O P R S T U V _