org.labkey.remoteapi.assay.nab
Class NAbRunsResponse

java.lang.Object
  org.labkey.remoteapi.CommandResponse
      org.labkey.remoteapi.assay.nab.NAbRunsResponse

public class NAbRunsResponse
extends CommandResponse

Response class for the NAbRunsCommand. This class provides helpful getter method to access particular bits of the parsed response data. Sample usage: public static void main(String[] args) throws Exception { // expected parameters: // args[0]: username // args[1]: password Connection conn = new Connection("http://myserver/labkey", args[0], args[1]); double avg = getAverageNeutDilution(cn, "/home", "NAB", 50); System.out.println("Average dilution where 50 percent neutralization occurs: " + avg); } public static double getAverageNeutDilution(Connection cn, String folderPath, String assayName, int neutPercent) throws CommandException, IOException { NAbRunsCommand nabCommand = new NAbRunsCommand(); nabCommand.setAssayName(assayName); nabCommand.setCalculateNeut(true); nabCommand.setIncludeFitParameters(false); nabCommand.setIncludeStats(false); nabCommand.setIncludeWells(false); NAbRunsResponse runResponse = nabCommand.execute(cn, folderPath); NAbRun[] runs = runResponse.getRuns(); int totalSamples = 0; double totalDilution = 0; for (NAbRun run : runs) { for (NAbSample sample : run.getSamples()) { for (NAbNeutralizationResult neutResult : sample.getNeutralizationResults()) { // only total non-infinite values (that is, results where we found a neutralizing dilution: if (neutResult.getCutoff() == neutPercent && !Double.isInfinite(neutResult.getCurveBasedDilution())) { totalSamples++; totalDilution += neutResult.getCurveBasedDilution(); } } } } return totalDilution/totalSamples; }

Constructor Summary

NAbRunsResponse(java.lang.String text, int statusCode, java.lang.String contentType, org.json.simple.JSONObject json, Command sourceCommand)
Constructs a new CommandResponse, initialized with the provided response text and status code.

Method Summary

java.lang.String	getAssayDescription()
java.lang.Integer	getAssayId()
java.lang.String	getAssayName()
NAbRun[]	getRuns()

Methods inherited from class org.labkey.remoteapi.CommandResponse

findObject, getContentType, getParsedData, getProperty, getProperty, getRequiredVersion, getSourceCommand, getStatusCode, getText

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NAbRunsResponse

public NAbRunsResponse(java.lang.String text,
                       int statusCode,
                       java.lang.String contentType,
                       org.json.simple.JSONObject json,
                       Command sourceCommand)

Constructs a new CommandResponse, initialized with the provided response text and status code.

Parameters:

text - The response text

statusCode - The HTTP status code

contentType - The response content type

json - The parsed JSONObject (or null if JSON was not returned).

sourceCommand - A copy of the command that created this response

Method Detail

getRuns

public NAbRun[] getRuns()

getAssayName

public java.lang.String getAssayName()

getAssayId

public java.lang.Integer getAssayId()

getAssayDescription

public java.lang.String getAssayDescription()