A B C D E F G H I N O P R S T U V _

A

ACL - Class in org.labkey.remoteapi.security

ACL() - Constructor for class org.labkey.remoteapi.security.ACL

addFilter(Filter) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Adds a new filter to the list.

addFilter(String, Object, Filter.Operator) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Constructs and adds a new filter to the list.

AddGroupMembersCommand - Class in org.labkey.remoteapi.security

Adds a set of principals to a security group.

AddGroupMembersCommand(int) - Constructor for class org.labkey.remoteapi.security.AddGroupMembersCommand

addPrincipalId(int...) - Method in class org.labkey.remoteapi.security.GroupMembersCommand

addPrincipalId(List<Integer>) - Method in class org.labkey.remoteapi.security.GroupMembersCommand

addRow(Map<String, Object>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Adds a row to the list of rows to be sent to the server.

addSort(Sort) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Adds a new sort definition to the current list.

addSort(String, Sort.Direction) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Constructs and adds a new sort definition to the current list.

afterExecute(HttpClient, HttpMethod, int) - Method in class org.labkey.remoteapi.Connection

ApiVersionException - Exception in org.labkey.remoteapi

User: adam Date: Feb 23, 2009 Time: 1:13:26 PM

AssayListCommand - Class in org.labkey.remoteapi.assay

Command for obtaining information about the current assay definitions in a particular folder.

AssayListCommand() - Constructor for class org.labkey.remoteapi.assay.AssayListCommand

Constructs a new AssayListCommand object.

AssayListCommand(AssayListCommand) - Constructor for class org.labkey.remoteapi.assay.AssayListCommand

Constructs a new AssayListCommand which is a copy of the source command

AssayListResponse - Class in org.labkey.remoteapi.assay

Response class for the AssayListCommand.

AssayListResponse(String, int, String, JSONObject, AssayListCommand) - Constructor for class org.labkey.remoteapi.assay.AssayListResponse

Constructs a new AssayListResponse

B

BaseQueryCommand<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi.query

Created by IntelliJ IDEA.

BaseQueryCommand(BaseQueryCommand<ResponseType>) - Constructor for class org.labkey.remoteapi.query.BaseQueryCommand

BaseQueryCommand(String, String) - Constructor for class org.labkey.remoteapi.query.BaseQueryCommand

BaseSelect - Interface in org.labkey.remoteapi.query

User: adam Date: Feb 27, 2009 Time: 11:06:20 AM

Batch - Class in org.labkey.remoteapi.assay

User: jeckels Date: Apr 28, 2010

Batch() - Constructor for class org.labkey.remoteapi.assay.Batch

Batch(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Batch

beforeExecute(HttpClient, HttpMethod) - Method in class org.labkey.remoteapi.Connection

C

CaseInsensitiveHashMap<V> - Class in org.labkey.remoteapi.collections

Created by IntelliJ IDEA.

CaseInsensitiveHashMap() - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

CaseInsensitiveHashMap(Map<String, V>) - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

CaseInsensitiveHashMap(int) - Constructor for class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

caseInsensitizeRowMaps() - Method in class org.labkey.remoteapi.query.RowsResponse

clear() - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

clearPrincipalIds() - Method in class org.labkey.remoteapi.security.GroupMembersCommand

Command<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi

Base class for all API commands.

Command(String, String) - Constructor for class org.labkey.remoteapi.Command

Constructs a new Command object for calling the specified API action on the specified controller.

Command(Command<ResponseType>) - Constructor for class org.labkey.remoteapi.Command

Constructs a new Command from an existing command

Command.CommonParameters - Enum in org.labkey.remoteapi

An enum of common parameter names used in API URLs.

CommandException - Exception in org.labkey.remoteapi

Represents an exception that occurs while executing a command.

CommandException(String) - Constructor for exception org.labkey.remoteapi.CommandException

Constructs a new CommandException given a message only.

CommandException(String, int, Map<String, Object>, String) - Constructor for exception org.labkey.remoteapi.CommandException

Constructs a new CommandException given a message, HTTP status code, and exception property map (which may be null).

CommandResponse - Class in org.labkey.remoteapi

Represents the details of a response returned from the LabKey Server.

CommandResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.CommandResponse

Constructs a new CommandResponse, initialized with the provided response text and status code.

Connection - Class in org.labkey.remoteapi

Represents connection information for a particular LabKey Server.

Connection(String) - Constructor for class org.labkey.remoteapi.Connection

Constructs a new Connection object given a base URL.

Connection(String, String, String) - Constructor for class org.labkey.remoteapi.Connection

Constructs a new Connection object given a base URL and user credentials.

ContainerFilter - Enum in org.labkey.remoteapi.query

Represents a container filter that can be used with the ExecuteSqlCommand and the SelectRowsCommand.

containsKey(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

containsKey(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

CONTENT_TYPE_JSON - Static variable in class org.labkey.remoteapi.Command

A constant for the official JSON content type ("application/json")

copy() - Method in class org.labkey.remoteapi.assay.AssayListCommand

copy() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

copy() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand

copy() - Method in class org.labkey.remoteapi.Command

Returns a copy of this object.

copy() - Method in class org.labkey.remoteapi.PostCommand

copy() - Method in class org.labkey.remoteapi.query.DeleteRowsCommand

copy() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

copy() - Method in class org.labkey.remoteapi.query.GetQueriesCommand

copy() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

copy() - Method in class org.labkey.remoteapi.query.GetSchemasCommand

copy() - Method in class org.labkey.remoteapi.query.InsertRowsCommand

copy() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

copy() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

copy() - Method in class org.labkey.remoteapi.query.UpdateRowsCommand

copy() - Method in class org.labkey.remoteapi.security.CreateGroupCommand

copy() - Method in class org.labkey.remoteapi.security.CreateUserCommand

copy() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand

copy() - Method in class org.labkey.remoteapi.security.GetContainersCommand

copy() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand

copy() - Method in class org.labkey.remoteapi.security.GetUsersCommand

copy() - Method in class org.labkey.remoteapi.security.RenameGroupCommand

CreateGroupCommand - Class in org.labkey.remoteapi.security

Creates a new user group.

CreateGroupCommand(String) - Constructor for class org.labkey.remoteapi.security.CreateGroupCommand

CreateGroupCommand(CreateGroupCommand) - Constructor for class org.labkey.remoteapi.security.CreateGroupCommand

CreateGroupResponse - Class in org.labkey.remoteapi.security

CreateGroupResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.CreateGroupResponse

createMethod() - Method in class org.labkey.remoteapi.Command

Creates the appropriate HttpMethod instance.

createMethod() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

createMethod() - Method in class org.labkey.remoteapi.PostCommand

Overrides Command.createMethod() to create a PostMethod object.

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.AssayListCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.Command

Creates an instance of the response class, initialized with the response text and the HTTP status code.

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.pipeline.FileNotificationCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetQueriesCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.GetSchemasCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Overridden to create a SelectRowsResponse object.

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.CreateGroupCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.CreateUserCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetContainersCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.GetUsersCommand

createResponse(String, int, String, JSONObject) - Method in class org.labkey.remoteapi.security.RenameGroupCommand

CreateUserCommand - Class in org.labkey.remoteapi.security

Create a new user account on the server.

CreateUserCommand(String) - Constructor for class org.labkey.remoteapi.security.CreateUserCommand

CreateUserCommand(CreateUserCommand) - Constructor for class org.labkey.remoteapi.security.CreateUserCommand

CreateUserResponse - Class in org.labkey.remoteapi.security

CreateUserResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.CreateUserResponse

D

Data - Class in org.labkey.remoteapi.assay

Represents a data file that may be used in a run.

Data() - Constructor for class org.labkey.remoteapi.assay.Data

Data(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Data

DeleteGroupCommand - Class in org.labkey.remoteapi.security

Deletes the existing group corresponding to the group id.

DeleteGroupCommand(int) - Constructor for class org.labkey.remoteapi.security.DeleteGroupCommand

DeleteGroupCommand(DeleteGroupCommand) - Constructor for class org.labkey.remoteapi.security.DeleteGroupCommand

DeleteRowsCommand - Class in org.labkey.remoteapi.query

Command for deleting rows from a read-write schema.

DeleteRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.DeleteRowsCommand

Constructs a DeleteRowsCommand for the given schemaName and queryName.

DeleteRowsCommand(DeleteRowsCommand) - Constructor for class org.labkey.remoteapi.query.DeleteRowsCommand

E

execute(Connection, String) - Method in class org.labkey.remoteapi.Command

Executes the command in the given folder on the specified connection, and returns information about the response.

execute(Connection, String) - Method in interface org.labkey.remoteapi.query.BaseSelect

executeMethod(HttpMethod) - Method in class org.labkey.remoteapi.Connection

ExecuteSqlCommand - Class in org.labkey.remoteapi.query

Command for executing arbitrary LabKey SQL.

ExecuteSqlCommand(String) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand

Constructs an ExceuteSqlCommand, initialized with a schema name.

ExecuteSqlCommand(ExecuteSqlCommand) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand

ExecuteSqlCommand(String, String) - Constructor for class org.labkey.remoteapi.query.ExecuteSqlCommand

Constructs an ExecuteSqlCommand, initialized with a schema name and SQL query.

ExpObject - Class in org.labkey.remoteapi.assay

Base class for experiment objects, including Run, Data, Batch, etc User: jeckels Date: Apr 28, 2010

ExpObject() - Constructor for class org.labkey.remoteapi.assay.ExpObject

ExpObject(JSONObject) - Constructor for class org.labkey.remoteapi.assay.ExpObject

F

FileNotificationCommand - Class in org.labkey.remoteapi.pipeline

Notifies the server that files may have become available for the pipeline to process.

FileNotificationCommand() - Constructor for class org.labkey.remoteapi.pipeline.FileNotificationCommand

FileNotificationResponse - Class in org.labkey.remoteapi.pipeline

Server response from FileNotificationCommand.

FileNotificationResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.pipeline.FileNotificationResponse

Filter - Class in org.labkey.remoteapi.query

Represents a filter definition for a query

Filter(String, Object) - Constructor for class org.labkey.remoteapi.query.Filter

Constructs a new equality Filter for the given column name and value.

Filter(String, Object, Filter.Operator) - Constructor for class org.labkey.remoteapi.query.Filter

Constructs a filter with a given column name, value and operator.

Filter(Filter) - Constructor for class org.labkey.remoteapi.query.Filter

Filter.Operator - Enum in org.labkey.remoteapi.query

findContainer(String, Map<String, Object>) - Method in class org.labkey.remoteapi.security.GetContainersResponse

findContainer(String[], int, Map<String, Object>) - Method in class org.labkey.remoteapi.security.GetContainersResponse

findObject(List<Map<String, Object>>, String, String) - Method in class org.labkey.remoteapi.CommandResponse

Finds an Map in a List of Maps who's property identified by propertyName matches the value supplied.

fixupParsedData() - Method in class org.labkey.remoteapi.query.RowsResponse

Fixes up the parsed data.

G

get(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

get(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

getAbsolutePath() - Method in class org.labkey.remoteapi.assay.Data

getActionName() - Method in class org.labkey.remoteapi.Command

Returns the action name specified when constructing this object.

getActionUrl(Connection, String) - Method in class org.labkey.remoteapi.Command

Returns the portion of the URL before the query string for this command.

getAllProperties() - Method in class org.labkey.remoteapi.ResponseObject

getAssayDescription() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse

getAssayId() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse

getAssayId() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchResponse

getAssayName() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

getAssayName() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse

getAsymmetry() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

getBaseUrl() - Method in class org.labkey.remoteapi.Connection

Returns the base URL for this connection.

getBatch() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchResponse

getCaption() - Method in enum org.labkey.remoteapi.query.Filter.Operator

getCaption() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getCellControl() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getColumn() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell

getColumnDataType(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the data type for the requested column name.

getColumnModel() - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the column model section of the response.

getColumnModel(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the column properties for the specified column name.

getColumnName() - Method in class org.labkey.remoteapi.query.Filter

getColumnName() - Method in class org.labkey.remoteapi.query.Sort

getColumnNames(String) - Method in class org.labkey.remoteapi.query.GetQueriesResponse

Returns the list of column names available in the given query name.

getColumns() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse

Returns the columns available in the given query name.

getColumns() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Returns the explicit column list to be requested, or null if the default set of columns will be requested.

getCommand() - Method in class org.labkey.remoteapi.query.SaveRowsResponse

Returns the 'command' response property.

getComment() - Method in class org.labkey.remoteapi.assay.Run

getConnectionManager() - Method in class org.labkey.remoteapi.Connection

Returns the connection manager to use when initializing the HttpClient object.

getContainerFilter() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Returns the container filter set for this command

getContainerFilter() - Method in interface org.labkey.remoteapi.query.BaseSelect

getContainerFilter() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns the container filter set for this command

getContainerId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getContainerId() - Method in class org.labkey.remoteapi.security.GetContainersResponse

getContainerPath() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getContainerPath() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getContainerPath() - Method in class org.labkey.remoteapi.security.GetUsersResponse

GetContainersCommand - Class in org.labkey.remoteapi.security

GetContainersCommand() - Constructor for class org.labkey.remoteapi.security.GetContainersCommand

GetContainersCommand(GetContainersCommand) - Constructor for class org.labkey.remoteapi.security.GetContainersCommand

GetContainersResponse - Class in org.labkey.remoteapi.security

GetContainersResponse(String, int, String, JSONObject, GetContainersCommand) - Constructor for class org.labkey.remoteapi.security.GetContainersResponse

getContentType() - Method in class org.labkey.remoteapi.CommandResponse

Returns the Content-Type header value from the response.

getControllerName() - Method in class org.labkey.remoteapi.Command

Returns the controller name specified when constructing this object.

getCurveBasedDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult

getCutoff() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult

getCutoffs() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getDataFileURL() - Method in class org.labkey.remoteapi.assay.Data

getDataInputs() - Method in class org.labkey.remoteapi.assay.Run

getDataOutputs() - Method in class org.labkey.remoteapi.assay.Run

getDefinition(String) - Method in class org.labkey.remoteapi.assay.AssayListResponse

Returns an assay definition for the assay identified by the specified name.

getDefinition(int) - Method in class org.labkey.remoteapi.assay.AssayListResponse

Returns an assay definition for the assay identified by the specified id.

getDefinitions() - Method in class org.labkey.remoteapi.assay.AssayListResponse

Returns the definitions section of the response.

getDescription() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate

getDirection() - Method in class org.labkey.remoteapi.query.Sort

getDisplayColumn() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getDisplayName() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo

getDisplayValue(String) - Method in interface org.labkey.remoteapi.query.Row

Returns a column's display value (if different from value).

getDisplayValue(String) - Method in class org.labkey.remoteapi.query.RowMap

getEmail() - Method in class org.labkey.remoteapi.Connection

Returns the email address to use for authentication.

getEmail() - Method in class org.labkey.remoteapi.security.CreateUserCommand

getEmail() - Method in class org.labkey.remoteapi.security.CreateUserResponse

getEmail() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo

getExtraContext() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Gets the additional extra context.

getFieldKey() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getFiles() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

getFilters() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Returns the current list of filters, or null if none are defined.

getFitError() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getFitParameters() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getGroup() - Method in class org.labkey.remoteapi.security.GetUsersCommand

getGroupId() - Method in class org.labkey.remoteapi.security.CreateGroupResponse

getGroupId() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand

getGroupId() - Method in class org.labkey.remoteapi.security.GetUsersCommand

getGroupId() - Method in class org.labkey.remoteapi.security.GroupMembersCommand

getGroupId() - Method in class org.labkey.remoteapi.security.RenameGroupCommand

GetGroupPermsCommand - Class in org.labkey.remoteapi.security

GetGroupPermsCommand() - Constructor for class org.labkey.remoteapi.security.GetGroupPermsCommand

GetGroupPermsCommand(GetGroupPermsCommand) - Constructor for class org.labkey.remoteapi.security.GetGroupPermsCommand

GetGroupPermsResponse - Class in org.labkey.remoteapi.security

GetGroupPermsResponse(String, int, String, JSONObject, GetGroupPermsCommand) - Constructor for class org.labkey.remoteapi.security.GetGroupPermsResponse

getHttpClient() - Method in class org.labkey.remoteapi.Connection

Returns the HttpClient object to use for this connection.

getHttpMethod(Connection, String) - Method in class org.labkey.remoteapi.Command

Returns the appropriate, initialized HttpMethod implementation.

getId() - Method in class org.labkey.remoteapi.assay.AssayListCommand

Returns the current assay id filter (if any).

getId() - Method in class org.labkey.remoteapi.assay.ExpObject

getIdColumn() - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the name of the column containing the primary key value for each row.

getInflection() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

getJsonObject() - Method in class org.labkey.remoteapi.assay.SaveAssayBatchCommand

getJsonObject() - Method in class org.labkey.remoteapi.PostCommand

Returns the JSON object to post, or null if the JSON object has not yet been set.

getJsonObject() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

getJsonObject() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Dynamically builds the JSON object to send based on the current schema name, query name and rows list.

getJsonObject() - Method in class org.labkey.remoteapi.security.CreateGroupCommand

getJsonObject() - Method in class org.labkey.remoteapi.security.CreateUserCommand

getJsonObject() - Method in class org.labkey.remoteapi.security.DeleteGroupCommand

getJsonObject() - Method in class org.labkey.remoteapi.security.GroupMembersCommand

getJsonObject() - Method in class org.labkey.remoteapi.security.RenameGroupCommand

getKeyColumn() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getLookup() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getMax() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

getMax() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

getMaxDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getMaxRows() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Returns the current row limit value.

getMaxRows() - Method in interface org.labkey.remoteapi.query.BaseSelect

getMaxRows() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns the current row limit value.

getMean() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

getMessage() - Method in class org.labkey.remoteapi.security.CreateUserResponse

getMetaData() - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the meta-data section of the response.

getMetaData(String) - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the meta-data for a given column name.

getMin() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

getMin() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

getMinDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getMvRawValue(String) - Method in interface org.labkey.remoteapi.query.Row

Returns the column's missing-value raw value.

getMvRawValue(String) - Method in class org.labkey.remoteapi.query.RowMap

getMvValue(String) - Method in interface org.labkey.remoteapi.query.Row

Returns a column's missing-value indicator.

getMvValue(String) - Method in class org.labkey.remoteapi.query.RowMap

getName() - Method in class org.labkey.remoteapi.assay.AssayListCommand

Returns the assay name filter upon (if any)

getName() - Method in class org.labkey.remoteapi.assay.ExpObject

getName() - Method in enum org.labkey.remoteapi.query.Filter.Operator

getName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse

Returns the query name that is described by this response

getName() - Method in class org.labkey.remoteapi.security.CreateGroupCommand

getName() - Method in class org.labkey.remoteapi.security.GetUsersCommand

getNeutPercent() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate

getNeutPlusMinus() - Method in class org.labkey.remoteapi.assay.nab.model.NAbReplicate

getNeutralizationResults() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getNewName() - Method in class org.labkey.remoteapi.security.RenameGroupCommand

getNewName() - Method in class org.labkey.remoteapi.security.RenameGroupResponse

getObjectId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getOffset() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Returns the index of the first row in the resultset to return (defaults to 0).

getOffset() - Method in interface org.labkey.remoteapi.query.BaseSelect

getOffset() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns the index of the first row in the resultset to return (defaults to 0).

getOldName() - Method in class org.labkey.remoteapi.security.RenameGroupResponse

getOperator() - Method in class org.labkey.remoteapi.query.Filter

getOperator(String) - Static method in enum org.labkey.remoteapi.query.Filter.Operator

getParameters() - Method in class org.labkey.remoteapi.assay.AssayListCommand

getParameters() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

getParameters() - Method in class org.labkey.remoteapi.Command

Returns the current parameter map, or null if a map has not yet been set.

getParameters() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

getParameters() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

getParameters() - Method in class org.labkey.remoteapi.query.GetQueriesCommand

getParameters() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

getParameters() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

getParameters() - Method in class org.labkey.remoteapi.security.GetContainersCommand

getParameters() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand

getParameters() - Method in class org.labkey.remoteapi.security.GetUsersCommand

getParamValueAsString(Object, String) - Method in class org.labkey.remoteapi.Command

Returns an appropriate string encoding of the parameter value.

getParsedData() - Method in class org.labkey.remoteapi.CommandResponse

Attempts to parse the response text and return a property Map.

getPassword() - Method in class org.labkey.remoteapi.Connection

Returns the password to use for authentication.

getPath() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

getPipelinePath() - Method in class org.labkey.remoteapi.assay.Data

getPointBasedDilution() - Method in class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult

getPrincipals() - Method in class org.labkey.remoteapi.security.GroupMembersCommand

getProgrammaticName() - Method in enum org.labkey.remoteapi.query.Filter.Operator

getProperties() - Method in class org.labkey.remoteapi.assay.ExpObject

getProperties() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getProperties() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getProperties() - Method in exception org.labkey.remoteapi.CommandException

Returns the exception property map, or null if no map was set.

getProperties() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getProperty(String) - Method in class org.labkey.remoteapi.CommandResponse

Returns the value of a specific property in the parsed data given a path to that property.

getProperty(String[], int, Map<String, Object>) - Method in class org.labkey.remoteapi.CommandResponse

Called by CommandResponse.getProperty(String) after splitting the path into a String[], and recursively by itself as it descends the property hierarchy.

getProtocol() - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

GetQueriesCommand - Class in org.labkey.remoteapi.query

Command for obtaining the list of queries available within a given schema.

GetQueriesCommand(String) - Constructor for class org.labkey.remoteapi.query.GetQueriesCommand

Constructs the command given a particular schema name.

GetQueriesCommand(GetQueriesCommand) - Constructor for class org.labkey.remoteapi.query.GetQueriesCommand

GetQueriesResponse - Class in org.labkey.remoteapi.query

Represents the response from a GetQueriesCommand.

GetQueriesResponse(String, int, String, JSONObject, GetQueriesCommand) - Constructor for class org.labkey.remoteapi.query.GetQueriesResponse

GetQueryDetailsCommand - Class in org.labkey.remoteapi.query

Command for obtaining the list of queries available within a given schema.

GetQueryDetailsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsCommand

Constructs the command given a particular schema name.

GetQueryDetailsCommand(GetQueryDetailsCommand) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsCommand

GetQueryDetailsResponse - Class in org.labkey.remoteapi.query

Represents the response from a GetQueriesCommand.

GetQueryDetailsResponse(String, int, String, JSONObject, GetQueryDetailsCommand) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsResponse

GetQueryDetailsResponse.Column - Class in org.labkey.remoteapi.query

GetQueryDetailsResponse.Lookup - Class in org.labkey.remoteapi.query

GetQueryDetailsResponse.Lookup(Map<String, Object>) - Constructor for class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getQueryName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

getQueryName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getQueryName() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Returns the query name

getQueryName() - Method in class org.labkey.remoteapi.query.SaveRowsResponse

Returns the 'queryName' response property.

getQueryName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Returns the query this command will request.

getQueryNames() - Method in class org.labkey.remoteapi.query.GetQueriesResponse

Returns the list of available query names in the given schema.

getQueryString() - Method in class org.labkey.remoteapi.Command

Returns the query string portion of the URL for this command.

getQueryStringParamName() - Method in class org.labkey.remoteapi.query.Filter

Returns the query string parameter name for this filter.

getQueryStringParamValue() - Method in class org.labkey.remoteapi.query.Filter

Returns the query string parameter value (not URL-encoded).

getReplicates() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getRequiredVersion() - Method in class org.labkey.remoteapi.Command

Returns the required version number of this API call.

getRequiredVersion() - Method in class org.labkey.remoteapi.CommandResponse

Returns the API version number required by the source command.

getRequiredVersion() - Method in interface org.labkey.remoteapi.query.BaseSelect

getResponseText() - Method in exception org.labkey.remoteapi.CommandException

Returns the text of the response

getRow() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell

getRowCount() - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns the number of rows this query could return.

getRows() - Method in class org.labkey.remoteapi.query.RowsResponse

Returns the list of rows from the parsed response data.

getRows() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Returns the current list of 'rows' (i.e., Maps) that will be sent to the server.

getRowsAffected() - Method in class org.labkey.remoteapi.query.SaveRowsResponse

Returns the 'rowsAffected' response property.

getRowset() - Method in class org.labkey.remoteapi.query.SelectRowsResponse

Returns an iterable Rowset.

getRunId() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getRuns() - Method in class org.labkey.remoteapi.assay.Batch

getRuns() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsResponse

getSamples() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getSchemaName() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns the current schema name.

getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueriesCommand

getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueriesResponse

Returns the schema name the queries in this response belong to.

getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse

Returns the schema name the query in this response belongs to.

getSchemaName() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

getSchemaName() - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Returns the schema name.

getSchemaName() - Method in class org.labkey.remoteapi.query.SaveRowsResponse

Returns the 'schemaName' response property.

getSchemaName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Returns the current schema name this command will query.

getSchemaNames() - Method in class org.labkey.remoteapi.query.GetSchemasResponse

Returns the list of schema names available in the folder path in which this command was executed.

GetSchemasCommand - Class in org.labkey.remoteapi.query

Command to obtain the list of schemas available in a given folder path.

GetSchemasCommand() - Constructor for class org.labkey.remoteapi.query.GetSchemasCommand

GetSchemasCommand(GetSchemasCommand) - Constructor for class org.labkey.remoteapi.query.GetSchemasCommand

GetSchemasResponse - Class in org.labkey.remoteapi.query

Represents the response of a GetSchemasCommand.

GetSchemasResponse(String, int, String, JSONObject, GetSchemasCommand) - Constructor for class org.labkey.remoteapi.query.GetSchemasResponse

getSize() - Method in interface org.labkey.remoteapi.query.Rowset

getSize() - Method in class org.labkey.remoteapi.query.RowsResponseRowset

getSlope() - Method in class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

getSortQueryStringParam() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Constructs the sort query string parameter from the current list of sort definitions.

getSorts() - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Returns the current list of sort definitions.

getSourceCommand() - Method in class org.labkey.remoteapi.CommandResponse

Returns a reference to a copy of the command that created this response

getSql() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns the current SQL query.

getStatusCode() - Method in exception org.labkey.remoteapi.CommandException

Returns the HTTP status code returned by the server.

getStatusCode() - Method in class org.labkey.remoteapi.CommandResponse

Returns the HTTP status code (typically 200).

getStddev() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

getText() - Method in class org.labkey.remoteapi.CommandResponse

Returns the raw response text.

getTimeout() - Method in class org.labkey.remoteapi.Command

Returns the current command timeout setting in milliseconds (defaults to 60000).

getType() - Method in class org.labkey.remoteapi.assay.AssayListCommand

Returns the current assay type filter (if any).

getType() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

getUrl(String) - Method in interface org.labkey.remoteapi.query.Row

Returns a column's URL

getUrl(String) - Method in class org.labkey.remoteapi.query.RowMap

getUserId() - Method in class org.labkey.remoteapi.security.CreateUserResponse

getUserId() - Method in class org.labkey.remoteapi.security.GetUsersResponse.UserInfo

getUserPermissions() - Method in class org.labkey.remoteapi.security.GetContainersResponse

getUserPermissions(String) - Method in class org.labkey.remoteapi.security.GetContainersResponse

GetUsersCommand - Class in org.labkey.remoteapi.security

Returns a list of users given selection criteria.

GetUsersCommand() - Constructor for class org.labkey.remoteapi.security.GetUsersCommand

GetUsersCommand(Command, String, int, String) - Constructor for class org.labkey.remoteapi.security.GetUsersCommand

getUsersInfo() - Method in class org.labkey.remoteapi.security.GetUsersResponse

GetUsersResponse - Class in org.labkey.remoteapi.security

The result of a GetUsersCommand request.

GetUsersResponse(String, int, String, JSONObject, GetUsersCommand) - Constructor for class org.labkey.remoteapi.security.GetUsersResponse

GetUsersResponse.UserInfo - Class in org.labkey.remoteapi.security

Information about a single user that matched the request

getValue() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWell

getValue() - Method in class org.labkey.remoteapi.query.Filter

getValue(String) - Method in interface org.labkey.remoteapi.query.Row

Returns a column's raw value.

getValue(String) - Method in class org.labkey.remoteapi.query.RowMap

getViewName() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Returns the current saved view name this command will request.

getVirusControl() - Method in class org.labkey.remoteapi.assay.nab.model.NAbRun

getWellgroupName() - Method in class org.labkey.remoteapi.assay.nab.model.NAbSample

getWells() - Method in class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

GroupMembersCommand - Class in org.labkey.remoteapi.security

Base class for AddGroupMembersCommand and RemoveGroupMembersCommand

GroupMembersCommand(String, int) - Constructor for class org.labkey.remoteapi.security.GroupMembersCommand

GroupMembersCommand(GroupMembersCommand) - Constructor for class org.labkey.remoteapi.security.GroupMembersCommand

H

hasPermission(int) - Method in class org.labkey.remoteapi.security.GetContainersResponse

hasPermission(int, String) - Method in class org.labkey.remoteapi.security.GetContainersResponse

I

InsertRowsCommand - Class in org.labkey.remoteapi.query

Command for inserting rows into a table in a read-write schema.

InsertRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.InsertRowsCommand

Constructs an InsertRowsCommand for the given schemaName and queryName.

InsertRowsCommand(InsertRowsCommand) - Constructor for class org.labkey.remoteapi.query.InsertRowsCommand

isAcceptSelfSignedCerts() - Method in class org.labkey.remoteapi.Connection

Returns true if the connection should accept a self-signed SSL certificate when using HTTPS, false otherwise.

isAutoIncrement() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isCalculateNeut() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

isExtendedFormat() - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Returns whether the extended format will be requested.

isExtendedFormat() - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Returns whether the extended format will be requested.

isHidden() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isIncludeColumns() - Method in class org.labkey.remoteapi.query.GetQueriesCommand

isIncludeFitParameters() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

isIncludeStats() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

isIncludeSubfolders() - Method in class org.labkey.remoteapi.security.GetContainersCommand

isIncludeSubfolders() - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand

Returns whether the command will recurse down the subfolders of the folder in which the command is executed.

isIncludeUserQueries() - Method in class org.labkey.remoteapi.query.GetQueriesCommand

isIncludeWells() - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

isKeyField() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isMvEnabled() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isNullable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isPublic() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Lookup

isReadOnly() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isSelectable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isSendEmail() - Method in class org.labkey.remoteapi.security.CreateUserCommand

isUserEditable() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

isValueRequired() - Method in enum org.labkey.remoteapi.query.Filter.Operator

isVersionField() - Method in class org.labkey.remoteapi.query.GetQueryDetailsResponse.Column

iterator() - Method in class org.labkey.remoteapi.query.RowsResponseRowset

N

NAbCurveParameters - Class in org.labkey.remoteapi.assay.nab.model

NAbCurveParameters(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbCurveParameters

NAbNeutralizationResult - Class in org.labkey.remoteapi.assay.nab.model

NAbNeutralizationResult(long, double, double) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbNeutralizationResult

NAbReplicate - Class in org.labkey.remoteapi.assay.nab.model

NAbReplicate(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbReplicate

NAbRun - Class in org.labkey.remoteapi.assay.nab.model

NAbRun(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbRun

NAbRunsCommand - Class in org.labkey.remoteapi.assay.nab

Command for obtaining information about the current assay definitions in a particular folder.

NAbRunsCommand() - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsCommand

Constructs a new AssayListCommand object.

NAbRunsCommand(NAbRunsCommand) - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsCommand

Constructs a new NAbRunsCommand which is a copy of the source command

NAbRunsResponse - Class in org.labkey.remoteapi.assay.nab

Response class for the NAbRunsCommand.

NAbRunsResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.assay.nab.NAbRunsResponse

Constructs a new CommandResponse, initialized with the provided response text and status code.

NAbSample - Class in org.labkey.remoteapi.assay.nab.model

NAbSample(Map<String, Object>, long[]) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbSample

NAbWell - Class in org.labkey.remoteapi.assay.nab.model

NAbWell(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbWell

NAbWellGroup - Class in org.labkey.remoteapi.assay.nab.model

NAbWellGroup(Map<String, Object>) - Constructor for class org.labkey.remoteapi.assay.nab.model.NAbWellGroup

O

org.labkey.remoteapi - package org.labkey.remoteapi

org.labkey.remoteapi.assay - package org.labkey.remoteapi.assay

org.labkey.remoteapi.assay.nab - package org.labkey.remoteapi.assay.nab

org.labkey.remoteapi.assay.nab.model - package org.labkey.remoteapi.assay.nab.model

org.labkey.remoteapi.collections - package org.labkey.remoteapi.collections

org.labkey.remoteapi.ms2 - package org.labkey.remoteapi.ms2

org.labkey.remoteapi.pipeline - package org.labkey.remoteapi.pipeline

org.labkey.remoteapi.query - package org.labkey.remoteapi.query

org.labkey.remoteapi.security - package org.labkey.remoteapi.security

P

parseJsonType(String) - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType

PERM_ADMIN - Static variable in class org.labkey.remoteapi.security.ACL

PERM_ALLOWALL - Static variable in class org.labkey.remoteapi.security.ACL

PERM_DELETE - Static variable in class org.labkey.remoteapi.security.ACL

PERM_DELETEOWN - Static variable in class org.labkey.remoteapi.security.ACL

PERM_INSERT - Static variable in class org.labkey.remoteapi.security.ACL

PERM_NONE - Static variable in class org.labkey.remoteapi.security.ACL

PERM_READ - Static variable in class org.labkey.remoteapi.security.ACL

PERM_READOWN - Static variable in class org.labkey.remoteapi.security.ACL

PERM_UPDATE - Static variable in class org.labkey.remoteapi.security.ACL

PERM_UPDATEOWN - Static variable in class org.labkey.remoteapi.security.ACL

PostCommand<ResponseType extends CommandResponse> - Class in org.labkey.remoteapi

Base class for all commands that needs to post data to the server, rather than providing parameters in the query string.

PostCommand(String, String) - Constructor for class org.labkey.remoteapi.PostCommand

Constructs a new PostCommand given a controller and action name.

PostCommand(PostCommand) - Constructor for class org.labkey.remoteapi.PostCommand

put(String, V) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

R

remove(Object) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

remove(String) - Method in class org.labkey.remoteapi.collections.CaseInsensitiveHashMap

RemoveGroupMembersCommand - Class in org.labkey.remoteapi.security

Removes a set of principals from a security group.

RemoveGroupMembersCommand(int) - Constructor for class org.labkey.remoteapi.security.RemoveGroupMembersCommand

RenameGroupCommand - Class in org.labkey.remoteapi.security

Renames an existing group.

RenameGroupCommand(int, String) - Constructor for class org.labkey.remoteapi.security.RenameGroupCommand

RenameGroupCommand(RenameGroupCommand) - Constructor for class org.labkey.remoteapi.security.RenameGroupCommand

RenameGroupResponse - Class in org.labkey.remoteapi.security

RenameGroupResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.security.RenameGroupResponse

ResponseObject - Class in org.labkey.remoteapi

User: jeckels Date: Apr 3, 2010

ResponseObject(Map<String, Object>) - Constructor for class org.labkey.remoteapi.ResponseObject

Row - Interface in org.labkey.remoteapi.query

Provides a format-neutral way of obtaining a row's value.

RowMap - Class in org.labkey.remoteapi.query

RowMap() - Constructor for class org.labkey.remoteapi.query.RowMap

RowMap(Map<String, Object>) - Constructor for class org.labkey.remoteapi.query.RowMap

Rowset - Interface in org.labkey.remoteapi.query

Provides an iterable interface over the response rows that hides the differences between the simple and extended response formats.

RowsResponse - Class in org.labkey.remoteapi.query

Base class for command responses that contain an array of rows and meta-data about those rows.

RowsResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.query.RowsResponse

Constructs a new RowsResponse given the specified text and status code.

RowsResponseRowset - Class in org.labkey.remoteapi.query

RowsResponseRowset(List<Map<String, Object>>) - Constructor for class org.labkey.remoteapi.query.RowsResponseRowset

Run - Class in org.labkey.remoteapi.assay

Represents a single assay run User: jeckels Date: Apr 28, 2010

Run() - Constructor for class org.labkey.remoteapi.assay.Run

Run(JSONObject) - Constructor for class org.labkey.remoteapi.assay.Run

S

SaveAssayBatchCommand - Class in org.labkey.remoteapi.assay

Saves an assay batch on the server.

SaveAssayBatchCommand(int) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchCommand

SaveAssayBatchCommand(int, Batch) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchCommand

SaveAssayBatchResponse - Class in org.labkey.remoteapi.assay

User: jeckels Date: Apr 28, 2010

SaveAssayBatchResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.assay.SaveAssayBatchResponse

SaveRowsCommand - Class in org.labkey.remoteapi.query

Base class for commands that make changes to rows exposed from a given query in a given schema.

SaveRowsCommand(String, String, String) - Constructor for class org.labkey.remoteapi.query.SaveRowsCommand

Constructs a new SaveRowsCommand for a given schema, query and action name.

SaveRowsCommand(SaveRowsCommand) - Constructor for class org.labkey.remoteapi.query.SaveRowsCommand

SaveRowsResponse - Class in org.labkey.remoteapi.query

Response object used for commands that derive from SaveRowsCommand.

SaveRowsResponse(String, int, String, JSONObject, SaveRowsCommand) - Constructor for class org.labkey.remoteapi.query.SaveRowsResponse

Constructs a new SaveRowsResponse given the response text and status code

SelectRowsCommand - Class in org.labkey.remoteapi.query

Command for selecting data from any LabKey schema/query exposed on the server identified by the Connection object supplied to the Command.execute(org.labkey.remoteapi.Connection, String) method.

SelectRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.SelectRowsCommand

Constructs a new SelectRowsCommand for the given schema and query name.

SelectRowsCommand(SelectRowsCommand) - Constructor for class org.labkey.remoteapi.query.SelectRowsCommand

Constructs a new SelectRowsCommand that is a copy of the source command

SelectRowsResponse - Class in org.labkey.remoteapi.query

The command response class returned from the Command.execute(org.labkey.remoteapi.Connection, String) method.

SelectRowsResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.query.SelectRowsResponse

Constructs a new SelectRowsResponse given the response text and HTTP status code.

SelectRowsResponse.ColumnDataType - Enum in org.labkey.remoteapi.query

An enumeration of the possible column data types

setAbsolutePath(String) - Method in class org.labkey.remoteapi.assay.Data

setAcceptSelfSignedCerts(boolean) - Method in class org.labkey.remoteapi.Connection

Sets the accept self-signed certificates option.

setAssayName(String) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

setCalculateNeut(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

setColumnName(String) - Method in class org.labkey.remoteapi.query.Filter

setColumnName(String) - Method in class org.labkey.remoteapi.query.Sort

setColumns(List<String>) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Sets an explicit list of columns to request.

setComment(String) - Method in class org.labkey.remoteapi.assay.Run

setContainerFilter(ContainerFilter) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Sets the container filter for the sql to be executed.

setContainerFilter(ContainerFilter) - Method in interface org.labkey.remoteapi.query.BaseSelect

setContainerFilter(ContainerFilter) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Sets the container filter for the sql to be executed.

setDataFileURL(String) - Method in class org.labkey.remoteapi.assay.Data

setDataInputs(List<Data>) - Method in class org.labkey.remoteapi.assay.Run

setDataOutputs(List<Data>) - Method in class org.labkey.remoteapi.assay.Run

setDirection(Sort.Direction) - Method in class org.labkey.remoteapi.query.Sort

setEmail(String) - Method in class org.labkey.remoteapi.Connection

Sets the email address to use for authentication.

setEmail(String) - Method in class org.labkey.remoteapi.security.CreateUserCommand

Set the email address for the new user.

setExtendedFormat(boolean) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Set to true to request the extended response format, which includes URLs, Missing-Value indicators and display values in addition to the raw values.

setExtendedFormat(boolean) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Set to true to request the extended response format, which includes URLs, Missing-Value indicators and display values in addition to the raw values.

setExtraContext(Map<String, Object>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Sets the additional extra context.

setFiles(List<String>) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

setFilters(List<Filter>) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Sets the current list of filters.

setGroup(String) - Method in class org.labkey.remoteapi.security.GetUsersCommand

setGroupId(int) - Method in class org.labkey.remoteapi.security.DeleteGroupCommand

setGroupId(int) - Method in class org.labkey.remoteapi.security.GetUsersCommand

setGroupId(int) - Method in class org.labkey.remoteapi.security.GroupMembersCommand

setGroupId(int) - Method in class org.labkey.remoteapi.security.RenameGroupCommand

setId(Integer) - Method in class org.labkey.remoteapi.assay.AssayListCommand

Sets the current assay id filter.

setId(int) - Method in class org.labkey.remoteapi.assay.ExpObject

setIncludeColumns(boolean) - Method in class org.labkey.remoteapi.query.GetQueriesCommand

Pass false to omit information about the columns within each query.

setIncludeFitParameters(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

setIncludeStats(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

setIncludeSubfolders(boolean) - Method in class org.labkey.remoteapi.security.GetContainersCommand

setIncludeSubfolders(boolean) - Method in class org.labkey.remoteapi.security.GetGroupPermsCommand

Sets whether this command should recurse down the subfolders of the folder in which the command is executed.

setIncludeUserQueries(boolean) - Method in class org.labkey.remoteapi.query.GetQueriesCommand

Pass false to this method to omit user-defined queries from the results.

setIncludeWells(boolean) - Method in class org.labkey.remoteapi.assay.nab.NAbRunsCommand

setJsonObject(JSONObject) - Method in class org.labkey.remoteapi.PostCommand

Sets the JSON object to post.

setMap(Map<String, Object>) - Method in class org.labkey.remoteapi.query.RowMap

setMaxRows(int) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Sets the current row limit value.

setMaxRows(int) - Method in interface org.labkey.remoteapi.query.BaseSelect

setMaxRows(int) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Sets the current row limit value.

setName(String) - Method in class org.labkey.remoteapi.assay.AssayListCommand

Sets the assay name to filter upon.

setName(String) - Method in class org.labkey.remoteapi.assay.ExpObject

setName(String) - Method in class org.labkey.remoteapi.security.CreateGroupCommand

setName(String) - Method in class org.labkey.remoteapi.security.GetUsersCommand

setNewName(String) - Method in class org.labkey.remoteapi.security.RenameGroupCommand

setOffset(int) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Sets the index of the first row in the resultset to return from the server.

setOffset(int) - Method in interface org.labkey.remoteapi.query.BaseSelect

setOffset(int) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Sets the index of the first row in the resultset to return from the server.

setOperator(Filter.Operator) - Method in class org.labkey.remoteapi.query.Filter

setParameters(Map<String, Object>) - Method in class org.labkey.remoteapi.Command

Sets the current parameter map.

setPassword(String) - Method in class org.labkey.remoteapi.Connection

Sets the password to use for authentication.

setPath(String) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

setPipelinePath(String) - Method in class org.labkey.remoteapi.assay.Data

setProperties(Map<String, Object>) - Method in class org.labkey.remoteapi.assay.ExpObject

setProtocol(String) - Method in class org.labkey.remoteapi.ms2.StartSearchCommand

setQueryName(String) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

setQueryName(String) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Sets a new query name to update

setQueryName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Sets the query name this command will request.

setRequiredVersion(double) - Method in class org.labkey.remoteapi.Command

Sets the required version number for this API call.

setRequiredVersion(double) - Method in interface org.labkey.remoteapi.query.BaseSelect

setRows(List<Map<String, Object>>) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Sets the list of 'rows' (i.e., Maps) to be sent to the server.

setRuns(List<Run>) - Method in class org.labkey.remoteapi.assay.Batch

setSchemaName(String) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Sets the current schema name.

setSchemaName(String) - Method in class org.labkey.remoteapi.query.GetQueriesCommand

setSchemaName(String) - Method in class org.labkey.remoteapi.query.GetQueryDetailsCommand

setSchemaName(String) - Method in class org.labkey.remoteapi.query.SaveRowsCommand

Sets the schema name

setSchemaName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Sets the schema name this command will query.

setSendEmail(boolean) - Method in class org.labkey.remoteapi.security.CreateUserCommand

Set to true to send email to the user with login instructions, false to skip email.

setSorts(List<Sort>) - Method in class org.labkey.remoteapi.query.BaseQueryCommand

Sets the current set of sort definitions.

setSql(String) - Method in class org.labkey.remoteapi.query.ExecuteSqlCommand

Sets the SQL query to execute.

setTimeout(int) - Method in class org.labkey.remoteapi.Command

Sets the current command timeout setting.

setType(String) - Method in class org.labkey.remoteapi.assay.AssayListCommand

Sets the assay type filter.

setValue(Object) - Method in class org.labkey.remoteapi.query.Filter

setViewName(String) - Method in class org.labkey.remoteapi.query.SelectRowsCommand

Sets a particular saved view to request.

Sort - Class in org.labkey.remoteapi.query

Represents a particular sort order entry, which consists of a column name and an optional direction

Sort(String) - Constructor for class org.labkey.remoteapi.query.Sort

Sort(String, Sort.Direction) - Constructor for class org.labkey.remoteapi.query.Sort

Sort(Sort) - Constructor for class org.labkey.remoteapi.query.Sort

Sort.Direction - Enum in org.labkey.remoteapi.query

StartSearchCommand - Class in org.labkey.remoteapi.ms2

Initiates an MS2 search.

StartSearchCommand(StartSearchCommand.SearchEngine, String, String, List<String>) - Constructor for class org.labkey.remoteapi.ms2.StartSearchCommand

StartSearchCommand.SearchEngine - Enum in org.labkey.remoteapi.ms2

The set of supported search engines, which may or may not be available on any given server

StartSearchResponse - Class in org.labkey.remoteapi.ms2

User: jeckels Date: Feb 11, 2011

StartSearchResponse(String, int, String, JSONObject, Command) - Constructor for class org.labkey.remoteapi.ms2.StartSearchResponse

T

toJSONObject() - Method in class org.labkey.remoteapi.assay.Batch

toJSONObject() - Method in class org.labkey.remoteapi.assay.Data

toJSONObject() - Method in class org.labkey.remoteapi.assay.ExpObject

toJSONObject() - Method in class org.labkey.remoteapi.assay.Run

toString() - Method in class org.labkey.remoteapi.query.RowMap

U

UpdateRowsCommand - Class in org.labkey.remoteapi.query

Command for updating rows into a table in a read-write schema.

UpdateRowsCommand(String, String) - Constructor for class org.labkey.remoteapi.query.UpdateRowsCommand

Constructs an UpdateRowsCommand for the given schemaName and queryName.

UpdateRowsCommand(UpdateRowsCommand) - Constructor for class org.labkey.remoteapi.query.UpdateRowsCommand

V

valueOf(String) - Static method in enum org.labkey.remoteapi.Command.CommonParameters

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.labkey.remoteapi.ms2.StartSearchCommand.SearchEngine

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.labkey.remoteapi.query.ContainerFilter

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.labkey.remoteapi.query.Filter.Operator

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.labkey.remoteapi.query.Sort.Direction

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.labkey.remoteapi.Command.CommonParameters

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.labkey.remoteapi.ms2.StartSearchCommand.SearchEngine

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.labkey.remoteapi.query.ContainerFilter

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.labkey.remoteapi.query.Filter.Operator

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.labkey.remoteapi.query.SelectRowsResponse.ColumnDataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.labkey.remoteapi.query.Sort.Direction

Returns an array containing the constants of this enum type, in the order they are declared.

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_allProperties - Variable in class org.labkey.remoteapi.ResponseObject

_containerFilter - Variable in class org.labkey.remoteapi.query.BaseQueryCommand

_filters - Variable in class org.labkey.remoteapi.query.BaseQueryCommand

_maxRows - Variable in class org.labkey.remoteapi.query.BaseQueryCommand

_offset - Variable in class org.labkey.remoteapi.query.BaseQueryCommand

_sorts - Variable in class org.labkey.remoteapi.query.BaseQueryCommand

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